SMTL ID : 3bla.1

Synthetic Gene Encoded DcpS bound to inhibitor DG153249

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x DD3: 5-[(1S)-1-(3-chlorophenyl)ethoxy]quinazoline-2,4-diamine(Non-covalent)

DD3.1: 15 residues within 4Å: Chain A: I.47, T.94, Y.107, W.139, I.143, E.149, R.152, I.167, P.168, D.169, L.170, I.183, Y.237 Chain B: N.74, Y.77 13 PLIP interactions: 3 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:N.74, B:Y.77, B:Y.77, A:W.139, A:L.170, A:Y.237 Hydrogen bonds: A:R.152, A:P.168, A:D.169, A:L.170 Salt bridges: A:E.149 pi-Stacking: A:W.139, A:W.139 DD3.2: 8 residues within 4Å: Chain B: W.139, E.149, R.152, P.168, D.169, L.170, K.171, I.183 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:W.139, B:L.170 Hydrogen bonds: B:R.152, B:P.168, B:D.169, B:L.170, B:K.171 Salt bridges: B:E.149, B:D.169 pi-Stacking: B:W.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, J. et al., DcpS as a therapeutic target for spinal muscular atrophy. Acs Chem.Biol. (2008)

Release Date

2008-10-21

Peptides

Scavenger mRNA-decapping enzyme DcpS: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Scavenger mRNA-decapping enzyme DcpS

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