SMTL ID : 3bwu.1

Crystal structure of the ternary complex of FimD (N-Terminal Domain, FimDN) with FimC and the N-terminally truncated pilus subunit FimF (FimFt)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

hetero-1-1-1-mer

Ligands

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: F.133, R.135, I.185, V.203, M.204 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.135 Water bridges: A:F.133, A:F.133, A:E.205 EDO.2: 7 residues within 4Å: Chain A: Q.34, W.36, K.88, I.108 Chain B: D.11 Chain C: T.136 Ligands: PEG.9 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: A:K.88, C:T.136, B:D.11 EDO.3: 8 residues within 4Å: Chain A: T.151, V.152, N.164, A.165, L.166 Chain C: W.102, Q.142 Ligands: EDO.13 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:V.152, A:A.165, C:Q.142 Water bridges: A:K.112, A:L.166 EDO.4: 3 residues within 4Å: Chain A: D.41, G.42, R.110 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain C Water bridges: A:A.40, A:W.84, A:W.84, C:S.97, C:S.97, C:S.98 EDO.5: 5 residues within 4Å: Chain A: P.124, N.191, D.192, Y.193 Ligands: EDO.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.192 Water bridges: A:D.192, A:Y.193, A:Y.193 EDO.6: 8 residues within 4Å: Chain A: R.116, P.124, Y.148, Y.149, L.150, I.190, D.192 Ligands: EDO.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.190 Water bridges: A:R.116, A:R.116, A:A.127 EDO.7: 2 residues within 4Å: Chain A: A.118, K.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.119 Water bridges: A:P.117, A:L.120 EDO.8: 6 residues within 4Å: Chain A: Q.34, S.35, P.53, L.54 Chain B: D.12 Ligands: PEG.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.34, A:S.35, A:S.35 EDO.10: 7 residues within 4Å: Chain A: I.49, T.51, L.68 Chain B: T.32, Y.33, R.34, D.48 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.34, B:D.48 Water bridges: A:T.51, A:T.51 EDO.11: 5 residues within 4Å: Chain B: P.62, V.91, P.92, L.93, T.94 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.62, B:T.94, B:T.94 EDO.12: 4 residues within 4Å: Chain C: P.92, A.95, P.96, A.99 1 PLIP interactions: 1 interactions with chain C Water bridges: C:N.65 EDO.13: 6 residues within 4Å: Chain A: L.166 Chain C: K.52, S.97, W.102, E.140 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.52 Water bridges: C:S.97 EDO.14: 6 residues within 4Å: Chain C: P.36, F.37, E.86, N.114, F.115, Y.116 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:F.37, C:F.115, C:F.115

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 6 residues within 4Å: Chain A: W.36, E.38, K.44 Chain B: D.11 Ligands: EDO.2, EDO.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eidam, O. et al., Crystal structure of the ternary FimC-FimF(t)-FimD(N) complex indicates conserved pilus chaperone-subunit complex recognition by the usher FimD. Febs Lett. (2008)

Release Date

2008-03-04

Peptides

Chaperone protein fimC: A
Outer membrane usher protein FimD, N-terminal domain: B
Protein fimF: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
F

Chaperone protein fimC

Outer membrane usher protein FimD, N-terminal domain

Protein fimF

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