SMTL ID : 3c0z.1 (2 other biounits)

Crystal structure of catalytic domain of human histone deacetylase HDAC7 in complex with SAHA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.227, H.229, D.321 Ligands: SHH.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.227, A:D.227, A:H.229, A:D.321 ZN.2: 4 residues within 4Å: Chain A: C.53, C.55, H.61, C.138 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.53, A:C.55, A:H.61, A:C.138

2 x K: POTASSIUM ION(Non-covalent)

K.3: 6 residues within 4Å: Chain A: D.225, D.227, H.229, S.248, L.249, H.250 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.225, A:D.225, A:D.227, A:H.229, A:S.248 K.4: 4 residues within 4Å: Chain A: F.238, D.241, V.244, F.275 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:F.238, A:D.241, A:V.244, H2O.1, H2O.1

1 x SHH: OCTANEDIOIC ACID HYDROXYAMIDE PHENYLAMIDE(Non-covalent)

SHH.5: 9 residues within 4Å: Chain A: H.189, H.190, G.198, F.199, D.227, H.229, F.258, D.321 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.199, A:F.199, A:F.258 Water bridges: A:G.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schuetz, A. et al., Human HDAC7 harbors a class IIa histone deacetylase-specific zinc binding motif and cryptic deacetylase activity. J.Biol.Chem. (2008)

Release Date

2008-02-19

Peptides

Histone deacetylase 7a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone deacetylase 7a

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