SMTL ID : 3c3a.2 (1 other biounit)

Crystal Structure of human phosphoglycerate kinase bound to 3-phosphoglycerate and L-ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: A.218, K.219, D.222, K.223 Ligands: ADP.3 No protein-ligand interaction detected (PLIP)

1 x 3PG: 3-PHOSPHOGLYCERIC ACID(Non-covalent)

3PG.2: 11 residues within 4Å: Chain A: D.27, N.29, R.42, H.66, R.69, R.126, G.170, T.171, H.173, R.174, G.400 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.27, A:N.29, A:R.42, A:G.400 Water bridges: A:N.29, A:G.399, A:G.399 Salt bridges: A:R.42, A:H.66, A:R.69, A:R.126, A:R.174

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 15 residues within 4Å: Chain A: G.217, A.218, D.222, K.223, G.241, G.242, L.260, F.295, G.316, P.342, G.344, V.345, F.346, E.347 Ligands: MG.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.218, A:G.242, A:G.316, A:F.346, A:E.347 Water bridges: A:D.222, A:K.223 Salt bridges: A:K.223, A:K.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gondeau, C. et al., Molecular basis for the lack of enantioselectivity of human 3-phosphoglycerate kinase. Nucleic Acids Res. (2008)

Release Date

2008-07-01

Peptides

Phosphoglycerate kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Phosphoglycerate kinase 1

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