SMTL ID : 3c3b.2 (1 other biounit)

Crystal Structure of human phosphoglycerate kinase bound to D-CDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: N.29, H.66, R.69, R.126, R.174 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.29 Water bridges: A:H.66, A:T.171, A:H.173, A:R.174 Salt bridges: A:H.66, A:R.69, A:R.126, A:R.174

1 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)

CDP.2: 12 residues within 4Å: Chain A: G.216, G.217, A.218, K.223, G.241, G.242, L.260, F.295, L.317, P.342, G.344, V.345 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.295 Hydrogen bonds: A:G.217, A:A.218, A:G.242 Water bridges: A:K.223, A:K.223, A:K.223, A:K.223, A:L.260, A:L.260 Salt bridges: A:K.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gondeau, C. et al., Molecular basis for the lack of enantioselectivity of human 3-phosphoglycerate kinase. Nucleic Acids Res. (2008)

Release Date

2008-07-01

Peptides

Phosphoglycerate kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Phosphoglycerate kinase 1

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