SMTL ID : 3c56.1

Class II fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with N-(3-Hydroxypropyl)-glycolohydroxamic acid bisphosphate, a competitive inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.83, H.180, H.210, N.253 Ligands: PH4.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.83, A:H.180, A:H.210 ZN.3: 5 residues within 4Å: Chain B: H.83, H.180, H.210, N.253 Ligands: PH4.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.83, B:H.180, B:H.210

2 x PH4: 3-{hydroxy[(phosphonooxy)acetyl]amino}propyl dihydrogen phosphate(Non-covalent)

PH4.2: 19 residues within 4Å: Chain A: N.23, Q.47, S.49, D.82, H.83, H.180, G.181, K.184, H.210, G.211, A.212, S.213, N.253, T.254, D.255, T.256, R.259 Chain B: R.280 Ligands: ZN.1 18 PLIP interactions: 14 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Q.47, A:S.49, A:D.82, A:S.179, A:G.181, A:G.211, A:A.212, A:S.213, A:N.253, A:D.255, A:T.256 Water bridges: A:R.259, B:D.278, B:R.280, B:R.280 Salt bridges: A:K.184, A:R.259, B:R.280 PH4.4: 18 residues within 4Å: Chain A: R.280 Chain B: N.23, S.49, D.82, H.83, H.180, G.181, K.184, H.210, G.211, A.212, S.213, N.253, T.254, D.255, T.256, R.259 Ligands: ZN.3 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.47, B:S.49, B:D.82, B:G.181, B:G.211, B:A.212, B:S.213, B:N.253, B:D.255, B:T.256 Water bridges: B:N.23, B:R.259, A:R.280 Salt bridges: B:K.184, B:R.259, A:R.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fonvielle, M. et al., Synthesis and Biochemical Evaluation of Selective Inhibitors of Class II Fructose Bisphosphate Aldolases: Towards New Synthetic Antibiotics. Chemistry (2008)

Release Date

2008-08-26

Peptides

Fructose-bisphosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fructose-bisphosphate aldolase

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