SMTL ID : 3c6e.1

Crystal structure of the precursor membrane protein- envelope protein heterodimer from the dengue 2 virus at neutral pH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NDG- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NDG-MAN-MAN.1: 8 residues within 4Å: Chain A: N.75, F.98, M.126 Chain B: H.2, L.3, T.4, C.45, E.46 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.4, B:T.4, B:C.45, B:T.48, A:N.75 Hydrophobic interactions: A:N.75, A:F.98

1 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.2: 5 residues within 4Å: Chain B: V.31, M.33, N.69, S.70 Ligands: NAG.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.31, B:M.33, B:N.69

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.3: 3 residues within 4Å: Chain B: G.30, V.31 Ligands: NDG.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, L. et al., The flavivirus precursor membrane-envelope protein complex: structure and maturation. Science (2008)

Release Date

2008-04-08

Peptides

Envelope protein E: A
prM: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Envelope protein E

prM

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