- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-15-15-15-15-mer
- Ligands
- 60 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-functional Binders)(Non-covalent)
- 30 x BMA: beta-D-mannopyranose(Non-covalent)
BMA.3: 3 residues within 4Å:- Chain B: H.2
- Ligands: NAG.2, BMA.4
No protein-ligand interaction detected (PLIP)BMA.4: 4 residues within 4Å:- Chain B: H.2, L.3, T.4
- Ligands: BMA.3
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.4
BMA.9: 3 residues within 4Å:- Chain D: H.2
- Ligands: NAG.8, BMA.10
No protein-ligand interaction detected (PLIP)BMA.10: 4 residues within 4Å:- Chain D: H.2, L.3, T.4
- Ligands: BMA.9
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:T.4
BMA.15: 3 residues within 4Å:- Chain F: H.2
- Ligands: NAG.14, BMA.16
No protein-ligand interaction detected (PLIP)BMA.16: 4 residues within 4Å:- Chain F: H.2, L.3, T.4
- Ligands: BMA.15
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:T.4
BMA.21: 3 residues within 4Å:- Chain N: H.2
- Ligands: NAG.20, BMA.22
No protein-ligand interaction detected (PLIP)BMA.22: 4 residues within 4Å:- Chain N: H.2, L.3, T.4
- Ligands: BMA.21
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:T.4
BMA.27: 3 residues within 4Å:- Chain P: H.2
- Ligands: NAG.26, BMA.28
No protein-ligand interaction detected (PLIP)BMA.28: 4 residues within 4Å:- Chain P: H.2, L.3, T.4
- Ligands: BMA.27
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:T.4
BMA.33: 3 residues within 4Å:- Chain R: H.2
- Ligands: NAG.32, BMA.34
No protein-ligand interaction detected (PLIP)BMA.34: 4 residues within 4Å:- Chain R: H.2, L.3, T.4
- Ligands: BMA.33
1 PLIP interactions:1 interactions with chain R- Hydrogen bonds: R:T.4
BMA.39: 3 residues within 4Å:- Chain Z: H.2
- Ligands: NAG.38, BMA.40
No protein-ligand interaction detected (PLIP)BMA.40: 4 residues within 4Å:- Chain Z: H.2, L.3, T.4
- Ligands: BMA.39
2 PLIP interactions:2 interactions with chain Z- Hydrogen bonds: Z:T.4, Z:T.4
BMA.45: 3 residues within 4Å:- Chain 1: H.2
- Ligands: NAG.44, BMA.46
No protein-ligand interaction detected (PLIP)BMA.46: 4 residues within 4Å:- Chain 1: H.2, L.3, T.4
- Ligands: BMA.45
1 PLIP interactions:1 interactions with chain 1- Hydrogen bonds: 1:T.4
BMA.51: 3 residues within 4Å:- Chain 3: H.2
- Ligands: NAG.50, BMA.52
No protein-ligand interaction detected (PLIP)BMA.52: 4 residues within 4Å:- Chain 3: H.2, L.3, T.4
- Ligands: BMA.51
1 PLIP interactions:1 interactions with chain 3- Hydrogen bonds: 3:T.4
BMA.57: 3 residues within 4Å:- Ligands: NAG.56, BMA.58
- Chain b: H.2
No protein-ligand interaction detected (PLIP)BMA.58: 4 residues within 4Å:- Ligands: BMA.57
- Chain b: H.2, L.3, T.4
2 PLIP interactions:2 interactions with chain b- Hydrogen bonds: b:T.4, b:T.4
BMA.63: 3 residues within 4Å:- Ligands: NAG.62, BMA.64
- Chain d: H.2
No protein-ligand interaction detected (PLIP)BMA.64: 4 residues within 4Å:- Ligands: BMA.63
- Chain d: H.2, L.3, T.4
1 PLIP interactions:1 interactions with chain d- Hydrogen bonds: d:T.4
BMA.69: 3 residues within 4Å:- Ligands: NAG.68, BMA.70
- Chain f: H.2
No protein-ligand interaction detected (PLIP)BMA.70: 4 residues within 4Å:- Ligands: BMA.69
- Chain f: H.2, L.3, T.4
1 PLIP interactions:1 interactions with chain f- Hydrogen bonds: f:T.4
BMA.75: 3 residues within 4Å:- Ligands: NAG.74, BMA.76
- Chain n: H.2
No protein-ligand interaction detected (PLIP)BMA.76: 4 residues within 4Å:- Ligands: BMA.75
- Chain n: H.2, L.3, T.4
1 PLIP interactions:1 interactions with chain n- Hydrogen bonds: n:T.4
BMA.81: 3 residues within 4Å:- Ligands: NAG.80, BMA.82
- Chain p: H.2
No protein-ligand interaction detected (PLIP)BMA.82: 4 residues within 4Å:- Ligands: BMA.81
- Chain p: H.2, L.3, T.4
1 PLIP interactions:1 interactions with chain p- Hydrogen bonds: p:T.4
BMA.87: 3 residues within 4Å:- Ligands: NAG.86, BMA.88
- Chain r: H.2
No protein-ligand interaction detected (PLIP)BMA.88: 4 residues within 4Å:- Ligands: BMA.87
- Chain r: H.2, L.3, T.4
1 PLIP interactions:1 interactions with chain r- Hydrogen bonds: r:T.4
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Prasad, V.M. et al., Structure of the immature Zika virus at 9 angstrom resolution. Nat. Struct. Mol. Biol. (2017)
- Release Date
- 2017-01-11
- Peptides
- E protein: ACEMOQY02acemoq
pr domain: BDFNPRZ13bdfnpr
Protein E: GIKSUW468giksuw
M protein: HJLTVX579hjltvx - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EM
AO
CQ
EY
A0
C2
Ea
Ac
Ce
Em
Ao
Cq
EB
BD
DF
FN
BP
DR
FZ
B1
D3
Fb
Bd
Df
Fn
Bp
Dr
FG
GI
IK
KS
GU
IW
K4
G6
I8
Kg
Gi
Ik
Ks
Gu
Iw
KH
HJ
JL
LT
HV
JX
L5
H7
J9
Lh
Hj
Jl
Lt
Hv
Jx
L
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-15-15-15-15-mer
- Ligands
- 60 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-functional Binders)(Non-covalent)
- 30 x BMA: beta-D-mannopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Prasad, V.M. et al., Structure of the immature Zika virus at 9 angstrom resolution. Nat. Struct. Mol. Biol. (2017)
- Release Date
- 2017-01-11
- Peptides
- E protein: ACEMOQY02acemoq
pr domain: BDFNPRZ13bdfnpr
Protein E: GIKSUW468giksuw
M protein: HJLTVX579hjltvx - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EM
AO
CQ
EY
A0
C2
Ea
Ac
Ce
Em
Ao
Cq
EB
BD
DF
FN
BP
DR
FZ
B1
D3
Fb
Bd
Df
Fn
Bp
Dr
FG
GI
IK
KS
GU
IW
K4
G6
I8
Kg
Gi
Ik
Ks
Gu
Iw
KH
HJ
JL
LT
HV
JX
L5
H7
J9
Lh
Hj
Jl
Lt
Hv
Jx
L