SMTL ID : 3c6g.1 (1 other biounit)

Crystal structure of CYP2R1 in complex with vitamin D3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

3 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 2 residues within 4Å: Chain A: R.111, H.421 No protein-ligand interaction detected (PLIP) UNX.2: 4 residues within 4Å: Chain A: S.197, A.198, S.199, K.216 No protein-ligand interaction detected (PLIP) UNX.3: 2 residues within 4Å: Chain A: R.102, K.370 No protein-ligand interaction detected (PLIP)

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.4: 25 residues within 4Å: Chain A: R.83, L.98, L.99, W.107, R.111, F.118, T.165, L.281, A.284, G.285, T.288, T.289, V.292, V.349, I.353, H.355, L.378, P.414, F.415, S.416, R.420, C.422, L.423, G.424, A.428 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:L.98, A:F.118, A:L.281, A:A.284, A:V.292, A:V.349, A:V.349, A:I.353, A:L.378, A:F.415, A:L.423, A:A.428 Hydrogen bonds: A:L.99, A:S.416, A:S.416 Salt bridges: A:R.83, A:R.83, A:R.111, A:H.355, A:R.420 Metal complexes: A:C.422

1 x VD3: (1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLI DENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL(Non-covalent)

VD3.5: 18 residues within 4Å: Chain A: L.88, F.89, M.92, L.99, N.100, F.188, A.195, A.224, V.227, Y.228, F.276, G.279, E.280, T.288, V.349, I.353, M.461, T.462 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.88, A:F.89, A:L.99, A:F.188, A:F.188, A:A.195, A:F.276, A:E.280, A:T.288, A:V.349, A:T.462 Hydrogen bonds: A:A.224, A:Y.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Strushkevich, N. et al., Structural analysis of CYP2R1 in complex with vitamin D3. J.Mol.Biol. (2008)

Release Date

2008-02-19

Peptides

Cytochrome P450 2R1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 2R1

Related Entries With Identical Sequence