SMTL ID : 3c72.1

Engineered RabGGTase in complex with a peptidomimetic inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: D.238, C.240, D.280, H.290 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.238, B:H.290

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain B: H.64, M.66 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.64, B:M.66, H2O.5

1 x CX1: N-[(benzyloxy)carbonyl]-L-histidyl-N-methyl-L-phenylalanyl-L-tyrosine(Non-covalent)

CX1.3: 14 residues within 4Å: Chain A: Y.111 Chain B: S.48, L.96, Y.97, L.99, R.144, F.147, H.190, G.192, Q.193, Y.195, C.196, Y.241, W.244 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.99, B:R.144, B:F.147, B:Y.195, B:W.244 Hydrogen bonds: B:Y.97, B:Y.97, B:R.144 Water bridges: B:S.48, B:S.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, Z. et al., Development of selective RabGGTase inhibitors and crystal structure of a RabGGTase-inhibitor complex. Angew.Chem.Int.Ed.Engl. (2008)

Release Date

2008-07-22

Peptides

Geranylgeranyl transferase type-2 subunit alpha: A
Geranylgeranyl transferase type-2 subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl transferase type-2 subunit alpha

Geranylgeranyl transferase type-2 subunit beta

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