SMTL ID : 3c8o.3 (2 other biounits)

The Crystal Structure of RraA from PAO1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: A.11, Y.12, K.159 Ligands: PGE.23 Ligand excluded by PLIP EDO.2: 7 residues within 4Å: Chain A: N.45, L.74, G.75, L.78, R.97, K.118, K.121 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain A: D.98, V.99, D.100, V.101 Ligands: EDO.13 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: Y.12, L.15, Q.156, A.157 Ligand excluded by PLIP EDO.5: 2 residues within 4Å: Chain A: D.126, V.129 Ligand excluded by PLIP EDO.6: 1 residues within 4Å: Chain A: K.54 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain A: N.25, F.26, G.27, D.30 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain A: N.128, P.140, G.141 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: A.130, V.131, T.132 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain A: D.76, M.77, E.80, V.101 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: G.28, A.103, Q.104, D.106 Ligand excluded by PLIP EDO.12: 2 residues within 4Å: Chain A: F.143, A.157 Ligand excluded by PLIP EDO.13: 3 residues within 4Å: Chain A: D.100 Ligands: EDO.3, EDO.20 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain A: S.46, E.50, K.121, G.123 Ligand excluded by PLIP EDO.15: 2 residues within 4Å: Chain A: E.35, K.59 Ligand excluded by PLIP EDO.16: 3 residues within 4Å: Chain A: K.49, K.118, K.121 Ligand excluded by PLIP EDO.17: 3 residues within 4Å: Chain A: R.122, I.124 Ligands: PEG.25 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain A: Q.51, K.54, D.55, K.59 Ligand excluded by PLIP EDO.19: 3 residues within 4Å: Chain A: E.35, K.57, G.58 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain A: D.100, V.101, Q.104 Ligands: EDO.13 Ligand excluded by PLIP

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.21: 3 residues within 4Å: Chain A: K.81, K.84, N.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.81 PGE.22: 5 residues within 4Å: Chain A: E.14, L.15, E.142, V.153, P.155 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.142 PGE.23: 4 residues within 4Å: Chain A: D.7, A.11, P.161 Ligands: EDO.1 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.24: 8 residues within 4Å: Chain A: P.21, M.22, F.23, S.24, N.25, D.147, N.148, N.149 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.25, A:N.25 Water bridges: A:Q.110

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.25: 6 residues within 4Å: Chain A: F.42, E.43, R.71, T.119, D.120 Ligands: EDO.17 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.120, A:D.120, A:D.120 PEG.26: 3 residues within 4Å: Chain A: M.22, L.69, L.112 No protein-ligand interaction detected (PLIP) PEG.27: 4 residues within 4Å: Chain A: G.67, S.68, L.69, R.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.69, A:R.70 PEG.28: 3 residues within 4Å: Chain A: E.50, D.53, K.54 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, M. et al., The Crystal Structure of RraA from PAO1. To be published

Release Date

2009-02-17

Peptides

Regulator of ribonuclease activity A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Regulator of ribonuclease activity A

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