SMTL ID : 3c9r.1

AaThiL complexed with ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.79, D.107 Ligands: MG.2, MG.3, ATP.10 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.79, A:D.107, A:D.107 MG.2: 6 residues within 4Å: Chain A: D.63, D.107, R.178, D.243 Ligands: MG.1, ATP.10 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.63, A:D.107, A:D.243 MG.3: 4 residues within 4Å: Chain A: D.79 Chain B: N.155 Ligands: MG.1, ATP.10 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.79, H2O.1 MG.4: 2 residues within 4Å: Chain A: D.246 Ligands: ATP.10 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.246, A:D.246 MG.6: 5 residues within 4Å: Chain B: D.63, D.107, D.243 Ligands: ATP.5, MG.7 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.63, B:D.107, B:D.243, H2O.3 MG.7: 5 residues within 4Å: Chain B: D.79, D.107 Ligands: ATP.5, MG.6, MG.8 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.79, B:D.79, B:D.107, B:D.107 MG.8: 4 residues within 4Å: Chain A: N.155 Chain B: D.79 Ligands: ATP.5, MG.7 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.79, H2O.3 MG.9: 2 residues within 4Å: Chain B: D.246 Ligands: ATP.5 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.246, B:D.246

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.5: 24 residues within 4Å: Chain A: I.120, Y.137, G.153, G.154, N.155, I.156 Chain B: E.44, F.45, I.48, I.51, I.60, G.61, D.62, D.63, D.79, D.107, R.178, D.243, S.245, D.246 Ligands: MG.6, MG.7, MG.8, MG.9 13 PLIP interactions: 4 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:G.154, A:N.155, A:N.155, B:G.61, B:D.62, B:D.63, B:D.107, B:S.245 Water bridges: A:G.154, B:D.62, B:R.178, B:R.178 Salt bridges: B:R.178 ATP.10: 24 residues within 4Å: Chain A: F.45, I.48, I.51, I.60, G.61, D.62, D.63, D.79, D.107, R.178, D.243, S.245, D.246 Chain B: I.120, L.122, Y.137, G.153, G.154, N.155, I.156 Ligands: MG.1, MG.2, MG.3, MG.4 12 PLIP interactions: 7 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:G.61, A:D.62, A:D.63, A:S.245, A:S.245, B:G.154, B:N.155, B:N.155, B:N.155 Water bridges: A:D.62, B:G.154 Salt bridges: A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCulloch, K.M. et al., Structural studies of thiamin monophosphate kinase in complex with substrates and products. Biochemistry (2008)

Release Date

2008-03-18

Peptides

Thiamine monophosphate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thiamine monophosphate kinase

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