SMTL ID : 3ca3.5 (4 other biounits)

Crystal structure of Sambucus Nigra Agglutinin II (SNA-II)-tetragonal crystal form- complexed to N-Acetylgalactosamine

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.55 Å
Oligo State
homo-tetramer
Ligands
8 x NAG- FUC- NAG: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose
4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
8 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)
8 x NGA: 2-acetamido-2-deoxy-beta-D-galactopyranose(Non-covalent)
28 x SO4: SULFATE ION(Non-functional Binders)
4 x ACT: ACETATE ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Maveyraud, L. et al., Structural basis for sugar recognition, including the Tn carcinoma antigen, by the lectin SNA-II from Sambucus nigra. Proteins (2009)
Release Date
2008-11-25
Peptides
Agglutinin II: ABCD
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
C
A
D
A

Agglutinin II

Toggle Identical (ABCD)

Related Entries With Identical Sequence

3c9z.1 | 3ca0.1 | 3ca1.1 | 3ca3.1 | 3ca3.2 | 3ca3.3 | 3ca3.4 | 3ca4.1 | 3ca5.1 | 3ca5.2 | 3ca5.3 | 3ca5.4 | 3ca6.1 | 3ca6.2 | 3ca6.3 | 3ca6.4 | 3cah.1 | 3cah.2 | 3cah.3