SMTL ID : 3cim.1 (1 other biounit)

Carboxysome shell protein, CcmK2 C-terminal deletion mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-hexamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: R.11, S.39, R.41 Chain D: R.11, S.39 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.11, A:R.11, A:S.39, A:R.41 GOL.3: 5 residues within 4Å: Chain A: R.11, S.39 Chain B: R.11, S.39, R.41 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.11, B:R.11, B:S.39, B:R.41, A:R.11 Water bridges: A:R.11, A:R.11 GOL.4: 5 residues within 4Å: Chain C: R.11, S.39, R.41 Chain F: R.11, S.39 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.11, C:R.11, C:S.39, C:R.41 GOL.6: 5 residues within 4Å: Chain C: R.11, S.39 Chain D: R.11, S.39, R.41 7 PLIP interactions: 4 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:R.11, D:R.11, D:S.39, D:R.41, C:R.11 Water bridges: C:R.11, C:R.11 GOL.7: 5 residues within 4Å: Chain B: R.11, S.39 Chain E: R.11, S.39, R.41 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:R.11, E:R.11, E:S.39, E:R.41 GOL.9: 5 residues within 4Å: Chain E: R.11, S.39 Chain F: R.11, S.39, R.41 7 PLIP interactions: 4 interactions with chain F, 3 interactions with chain E Hydrogen bonds: F:R.11, F:R.11, F:S.39, F:R.41, E:R.11 Water bridges: E:R.11, E:R.11

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain B: K.25 Chain E: R.80 5 PLIP interactions: 1 interactions with chain E, 4 interactions with chain B Salt bridges: E:R.80, B:K.25 Water bridges: B:K.25, B:K.25, B:K.25 SO4.5: 2 residues within 4Å: Chain A: R.80 Chain D: K.25 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain A Water bridges: D:K.25, D:K.25, D:K.25 Salt bridges: D:K.25, A:R.80 SO4.8: 2 residues within 4Å: Chain C: R.80 Chain F: K.25 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain C Water bridges: F:K.25, F:K.25, F:K.25 Salt bridges: F:K.25, C:R.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, S. et al., Insights from multiple structures of the shell proteins from the beta-carboxysome. Protein Sci. (2009)

Release Date

2009-02-03

Peptides

Carbon dioxide-concentrating mechanism protein ccmK homolog 2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
B

D
C

E
B

F
C

Carbon dioxide-concentrating mechanism protein ccmK homolog 2

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