SMTL ID : 3cim.2 (1 other biounit)

Carboxysome shell protein, CcmK2 C-terminal deletion mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.80 Chain F: K.25 7 PLIP interactions: 6 interactions with chain F, 1 interactions with chain A Water bridges: F:K.25, F:K.25, F:K.25, F:K.25, F:K.25, A:R.80 Salt bridges: F:K.25 SO4.3: 2 residues within 4Å: Chain B: R.80 Chain D: K.25 7 PLIP interactions: 6 interactions with chain D, 1 interactions with chain B Water bridges: D:K.25, D:K.25, D:K.25, D:K.25, D:K.25, B:R.80 Salt bridges: D:K.25 SO4.5: 2 residues within 4Å: Chain C: R.80 Chain E: K.25 7 PLIP interactions: 1 interactions with chain C, 6 interactions with chain E Water bridges: C:R.80, E:K.25, E:K.25, E:K.25, E:K.25, E:K.25 Salt bridges: E:K.25 SO4.7: 2 residues within 4Å: Chain C: K.25 Chain D: R.80 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain D Water bridges: C:K.25, C:K.25, C:K.25, C:K.25, C:K.25, D:R.80 Salt bridges: C:K.25 SO4.9: 2 residues within 4Å: Chain A: K.25 Chain E: R.80 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain E Water bridges: A:K.25, A:K.25, A:K.25, A:K.25, A:K.25, E:R.80 Salt bridges: A:K.25 SO4.11: 2 residues within 4Å: Chain B: K.25 Chain F: R.80 7 PLIP interactions: 1 interactions with chain F, 6 interactions with chain B Water bridges: F:R.80, B:K.25, B:K.25, B:K.25, B:K.25, B:K.25 Salt bridges: B:K.25

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: R.11, S.39, R.41 Chain F: R.11, S.39 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain F Hydrogen bonds: A:R.11, A:R.11, A:S.39, A:R.41 Water bridges: F:R.11 GOL.4: 5 residues within 4Å: Chain B: R.11, S.39, R.41 Chain D: R.11, S.39 5 PLIP interactions: 1 interactions with chain D, 4 interactions with chain B Water bridges: D:R.11 Hydrogen bonds: B:R.11, B:R.11, B:S.39, B:R.41 GOL.6: 5 residues within 4Å: Chain C: R.11, S.39, R.41 Chain E: R.11, S.39 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:R.11, C:R.11, C:S.39, C:R.41 Water bridges: E:R.11 GOL.8: 5 residues within 4Å: Chain C: R.11, S.39 Chain D: R.11, S.39, R.41 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:R.11, D:R.11, D:S.39, D:R.41 Water bridges: C:R.11 GOL.10: 5 residues within 4Å: Chain A: R.11, S.39 Chain E: R.11, S.39, R.41 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:R.11, E:R.11, E:S.39, E:R.41 Water bridges: A:R.11 GOL.12: 5 residues within 4Å: Chain B: R.11, S.39 Chain F: R.11, S.39, R.41 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:R.11, F:R.11, F:S.39, F:R.41 Water bridges: B:R.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, S. et al., Insights from multiple structures of the shell proteins from the beta-carboxysome. Protein Sci. (2009)

Release Date

2009-02-03

Peptides

Carbon dioxide-concentrating mechanism protein ccmK homolog 2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Carbon dioxide-concentrating mechanism protein ccmK homolog 2

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