SMTL ID : 3cji.2 (3 other biounits)

Structure of Seneca Valley Virus-001

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 9 residues within 4Å: Chain B: T.5 Chain F: T.5 Chain J: T.5 Chain N: T.5 Chain R: T.5 Ligands: CA.2, CA.3, CA.4, CA.5 No protein-ligand interaction detected (PLIP) CA.2: 9 residues within 4Å: Chain B: T.5 Chain F: T.5 Chain J: T.5 Chain N: T.5 Chain R: T.5 Ligands: CA.1, CA.3, CA.4, CA.5 No protein-ligand interaction detected (PLIP) CA.3: 9 residues within 4Å: Chain B: T.5 Chain F: T.5 Chain J: T.5 Chain N: T.5 Chain R: T.5 Ligands: CA.1, CA.2, CA.4, CA.5 No protein-ligand interaction detected (PLIP) CA.4: 9 residues within 4Å: Chain B: T.5 Chain F: T.5 Chain J: T.5 Chain N: T.5 Chain R: T.5 Ligands: CA.1, CA.2, CA.3, CA.5 No protein-ligand interaction detected (PLIP) CA.5: 9 residues within 4Å: Chain B: T.5 Chain F: T.5 Chain J: T.5 Chain N: T.5 Chain R: T.5 Ligands: CA.1, CA.2, CA.3, CA.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Venkataraman, S. et al., Structure of Seneca Valley Virus-001: an oncolytic picornavirus representing a new genus. Structure (2008)

Release Date

2008-12-16

Peptides

Polyprotein: AEIMQ
Polyprotein: BFJNR
Polyprotein: CGKOS
Polyprotein: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
B

F
B

J
B

N
B

R
B

C
C

G
C

K
C

O
C

S
C

D
D

H
D

L
D

P
D

T
D

Polyprotein

Polyprotein

Polyprotein

Polyprotein

Related Entries With Identical Sequence