SMTL ID : 3cnx.1 (1 other biounit)

CRYSTAL STRUCTURE OF A PUTATIVE DEHYDRATASE FROM THE NTF2-LIKE FAMILY (SAV_4671) FROM STREPTOMYCES AVERMITILIS AT 2.10 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: D.102, T.103, R.140 Chain B: D.102, T.103, R.140 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: L.132 Ligand excluded by PLIP

2 x UNL: UNKNOWN LIGAND(Non-covalent)(Non-functional Binders)

UNL.2: 7 residues within 4Å: Chain A: M.25, H.62, P.63, Y.78, F.90, E.110, H.151 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.62, A:Y.78, A:H.151 UNL.8: 5 residues within 4Å: Chain B: H.62, P.63, Y.78, E.110, H.151 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.62, B:Y.78, B:E.110, B:H.151

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 4 residues within 4Å: Chain A: N.111, I.112, G.130, Q.131 No protein-ligand interaction detected (PLIP)

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 4 residues within 4Å: Chain A: F.30, S.34, R.71, L.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.34 PEG.5: 3 residues within 4Å: Chain A: E.23, E.26, F.90 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.26 PEG.12: 4 residues within 4Å: Chain B: E.124, L.125, G.126, L.128 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.124, B:L.125 Water bridges: B:L.128, B:L.128

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 2 residues within 4Å: Chain B: E.26, F.90 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.26, B:F.90, H2O.3, H2O.3

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.9: 6 residues within 4Å: Chain B: F.91, N.111, I.112, L.113, L.128, Q.131 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 3 residues within 4Å: Chain B: V.67, S.69, E.73 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:D.94 Hydrogen bonds: B:S.69, B:E.73 GOL.11: 3 residues within 4Å: Chain B: P.63, I.88, Q.131 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.131, B:Q.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of NTF2-like protein of unknown function (NP_825848.1) from Streptomyces avermitilis at 2.10 A resolution. To be published

Release Date

2008-04-08

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein

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