SMTL ID : 3cnx.2 (1 other biounit)

CRYSTAL STRUCTURE OF A PUTATIVE DEHYDRATASE FROM THE NTF2-LIKE FAMILY (SAV_4671) FROM STREPTOMYCES AVERMITILIS AT 2.10 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: E.26, F.90 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.26, A:F.90, H2O.2 MG.6: 2 residues within 4Å: Chain B: E.26, F.90 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.26, B:F.90, H2O.3

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: T.100, D.102, T.103, R.140 Chain B: T.103, R.140 Ligands: CL.7 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain A: T.103, R.140 Chain B: T.100, D.102, T.103, R.140 Ligands: CL.2 Ligand excluded by PLIP

2 x UNL: UNKNOWN LIGAND

UNL.3: 7 residues within 4Å: Chain A: M.25, H.62, P.63, Y.78, E.110, H.151, A.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.62, A:H.62 UNL.8: 7 residues within 4Å: Chain B: M.25, H.62, P.63, Y.78, E.110, H.151, A.153 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.110

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: W.65, L.68, E.73, R.76, S.77, L.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.73, A:R.76 GOL.9: 6 residues within 4Å: Chain B: W.65, L.68, E.73, R.76, S.77, L.80 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.73, B:R.76

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 4 residues within 4Å: Chain A: E.124, L.125, G.126, L.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.124, A:L.125 Water bridges: A:L.128 PEG.10: 4 residues within 4Å: Chain B: E.124, L.125, G.126, L.128 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.124, B:L.125 Water bridges: B:L.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of NTF2-like protein of unknown function (NP_825848.1) from Streptomyces avermitilis at 2.10 A resolution. To be published

Release Date

2008-04-08

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Uncharacterized protein

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