SMTL ID : 3cqb.1 (1 other biounit)

Crystal structure of heat shock protein HtpX domain from Vibrio parahaemolyticus RIMD 2210633

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-dimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: S.51, D.53 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.53, A:D.53, A:D.53 Water bridges: A:A.52 NA.6: 3 residues within 4Å: Chain B: D.50, T.72 Ligands: EDO.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.50, B:T.72

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: A.88, H.89 Ligands: EDO.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.88, A:S.92 Water bridges: A:H.89 EDO.4: 3 residues within 4Å: Chain A: N.2, A.3, S.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.2, A:A.3, A:S.4, A:S.4 Water bridges: A:K.5 EDO.5: 2 residues within 4Å: Chain A: H.76, N.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.77 EDO.7: 4 residues within 4Å: Chain B: A.88, H.89, S.92 Ligands: EDO.3 5 PLIP interactions: 5 interactions with chain B Water bridges: B:H.89, B:S.92, B:S.92, B:S.92, B:S.92 EDO.8: 6 residues within 4Å: Chain B: S.51, A.52, T.72, G.73, H.76 Ligands: NA.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.51

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 6 residues within 4Å: Chain B: W.27, L.74, L.75, M.78, R.80, A.83 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.80, B:R.80 Water bridges: B:T.24, B:L.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, R. et al., The crystal structure of heat shock protein HtpX domain from Vibrio parahaemolyticus RIMD 2210633. To be Published

Release Date

2008-05-27

Peptides

Probable protease htpX homolog: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable protease htpX homolog

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