SMTL ID : 3cup.1

Crystal structure of the MHC class II molecule I-Ag7 in complex with the peptide GAD221-235

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.09 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: R.80, N.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.80, A:N.82

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 7 residues within 4Å: Chain A: F.112, D.114, N.115, N.144, D.146, H.150 Chain B: R.175 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.115, A:D.146, A:D.146 Salt bridges: A:D.114, A:D.114, A:H.150, B:R.175

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, K. et al., Crystal structure of the MHC class II molecule I-Ag7 in complex with the peptide GAD221-235. To be Published

Release Date

2009-04-21

Peptides

H-2 class II histocompatibility antigen, A-D alpha chain: A
MHC class II H2-IA-beta chain linked to GAD221-235 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class II histocompatibility antigen, A-D alpha chain

MHC class II H2-IA-beta chain linked to GAD221-235 peptide

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