SMTL ID : 3cwd.1 (1 other biounit)

Molecular recognition of nitro-fatty acids by PPAR gamma

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-oligomer

Ligands

1 x LNA: (9E,12Z)-10-NITROOCTADECA-9,12-DIENOIC ACID(Covalent)

LNA.1: 11 residues within 4Å: Chain A: C.78, Q.79, R.81, S.82, I.119, Y.120, L.123, M.157, H.242, Y.266 Ligands: LNB.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.120, A:L.123 Hydrogen bonds: A:Q.79, A:Y.266 Salt bridges: A:H.242

1 x LNB: (9Z,12E)-12-NITROOCTADECA-9,12-DIENOIC ACID(Non-covalent)

LNB.2: 12 residues within 4Å: Chain A: C.78, Q.79, R.81, S.82, I.119, Y.120, L.133, I.134, M.157, H.242, Y.266 Ligands: LNA.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.120, A:I.134 Hydrogen bonds: A:Q.79, A:Y.266 Salt bridges: A:H.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Molecular recognition of nitrated fatty acids by PPAR gamma. Nat.Struct.Mol.Biol. (2008)

Release Date

2008-07-08

Peptides

Peroxisome proliferator-activated receptor gamma: A
SRC1-2 PEPTIDE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Peroxisome proliferator-activated receptor gamma

SRC1-2 PEPTIDE

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