SMTL ID : 6ijr.1 (1 other biounit)

Human PPARgamma ligand binding domain complexed with SB1495

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x A9C: N-{[3-({[(1S,2R)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide(Covalent)

A9C.1: 20 residues within 4Å: Chain A: E.65, H.72, T.74, I.87, F.88, G.90, C.91, R.94, S.95, I.132, Y.133, L.136, L.139, L.146, I.147, S.148, M.154, L.159, F.169, M.170 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:H.72, A:I.87, A:R.94, A:I.132, A:Y.133, A:L.136, A:L.139, A:I.147, A:L.159 Hydrogen bonds: A:S.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jang, J.Y. et al., Structural basis for the inhibitory effects of a novel reversible covalent ligand on PPAR gamma phosphorylation. Sci Rep (2019)

Release Date

2019-10-16

Peptides

Peroxisome proliferator-activated receptor gamma: A
16 mer peptide from Nuclear receptor coactivator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

16 mer peptide from Nuclear receptor coactivator 1

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