SMTL ID : 3d11.1

Crystal Structures of the Nipah G Attachment Glycoprotein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: Q.259, N.303, W.304, R.305, N.306, D.367 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain A: F.321, N.354 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- BMA- MAN: beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-MAN.3: 3 residues within 4Å: Chain A: L.130, N.131, Y.134 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.134 Water bridges: A:Y.134

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.203, S.205 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.205

19 x IOD: IODIDE ION(Non-functional Binders)

IOD.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: V.332, Y.333 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: S.132, H.231, Y.232 Ligand excluded by PLIP IOD.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: K.366, N.368 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain A: P.33, M.92 Ligand excluded by PLIP IOD.11: 4 residues within 4Å: Chain A: L.195, F.200, K.201 Ligands: IOD.20 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Chain A: P.33 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain A: Q.425, C.426 Ligands: IOD.18 Ligand excluded by PLIP IOD.14: 1 residues within 4Å: Chain A: M.140 Ligand excluded by PLIP IOD.15: 1 residues within 4Å: Chain A: Q.159 Ligand excluded by PLIP IOD.16: 2 residues within 4Å: Chain A: L.376, K.416 Ligand excluded by PLIP IOD.17: 4 residues within 4Å: Chain A: V.7, G.8, L.273, G.274 Ligand excluded by PLIP IOD.18: 5 residues within 4Å: Chain A: C.14, L.15, Q.16, C.426 Ligands: IOD.13 Ligand excluded by PLIP IOD.19: 3 residues within 4Å: Chain A: G.177, P.178, K.385 Ligand excluded by PLIP IOD.20: 2 residues within 4Å: Chain A: R.169 Ligands: IOD.11 Ligand excluded by PLIP IOD.21: 2 residues within 4Å: Chain A: K.17, I.370 Ligand excluded by PLIP IOD.22: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.23: 1 residues within 4Å: Chain A: P.266 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, K. et al., Host cell recognition by the henipaviruses: crystal structures of the Nipah G attachment glycoprotein and its complex with ephrin-B3. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-08-19

Peptides

Hemagglutinin-neuraminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hemagglutinin-neuraminidase

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