SMTL ID : 3d1g.1

Structure of a small molecule inhibitor bound to a DNA sliding clamp

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-dimer

Ligands

2 x 322: [(5R)-5-(2,3-dibromo-5-ethoxy-4-hydroxybenzyl)-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]acetic acid(Non-covalent)

322.1: 11 residues within 4Å: Chain A: R.152, T.172, G.174, H.175, R.176, P.242, D.243, V.247, S.346, V.360, M.362 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.247 Hydrogen bonds: A:R.152, A:R.152, A:D.243, A:S.346 Water bridges: A:S.346, A:S.346 Halogen bonds: A:T.172, A:V.360 322.2: 13 residues within 4Å: Chain B: R.152, Y.154, L.155, T.172, G.174, H.175, R.176, P.242, V.247, S.346, V.360, V.361, M.362 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:V.247 Hydrogen bonds: B:S.346 Water bridges: B:S.346, B:S.346, B:S.346, B:S.346, B:S.346 Salt bridges: B:R.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Georgescu, R.E. et al., Structure of a small-molecule inhibitor of a DNA polymerase sliding clamp. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2008-07-29

Peptides

DNA polymerase III subunit beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA polymerase III subunit beta

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