SMTL ID : 3d27.1

E. coli methionine aminopeptidase with Fe inhibitor W29

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 7 residues within 4Å: Chain A: D.105, H.168, T.199, E.201, E.232 Ligands: MN.2, W29.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.105, A:H.168, A:E.201, A:E.232 MN.2: 6 residues within 4Å: Chain A: D.94, T.96, D.105, E.232 Ligands: MN.1, W29.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.94, A:D.94, A:D.105, A:E.232, H2O.5

1 x W29: 4-(3-ethylthiophen-2-yl)benzene-1,2-diol(Non-covalent)

W29.3: 14 residues within 4Å: Chain A: Y.59, H.60, Y.62, C.67, H.76, D.94, D.105, H.168, H.175, E.201, W.218, E.232 Ligands: MN.1, MN.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.59, A:Y.62, A:W.218 pi-Stacking: A:Y.59 pi-Cation interactions: A:H.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W.L. et al., Discovery of inhibitors of Escherichia coli methionine aminopeptidase with the Fe(II)-form selectivity and antibacterial activity. J.Med.Chem. (2008)

Release Date

2008-08-19

Peptides

Methionine aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase

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