SMTL ID : 3d7z.1

Crystal Structure of P38 Kinase in Complex with a biphenyl amide inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.49, M.109, G.110, N.159, E.160 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.108, A:G.110, A:E.160 Water bridges: A:R.49, A:R.49 Salt bridges: A:R.49

1 x GK5: N~3~-cyclopropyl-N~4~'-(cyclopropylmethyl)-6-methylbiphenyl-3,4'-dicarboxamide(Non-covalent)

GK5.2: 16 residues within 4Å: Chain A: A.51, K.53, E.71, L.75, I.84, L.104, T.106, H.107, L.108, M.109, A.111, D.112, L.167, D.168, F.169, L.171 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.51, A:E.71, A:L.75, A:L.75, A:L.75, A:I.84, A:T.106, A:L.167, A:F.169 Hydrogen bonds: A:E.71, A:E.71, A:M.109, A:D.168

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: Y.69, R.73, D.324, S.326, F.327, R.330 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.69, A:R.73, A:S.326, A:R.330, A:R.330 Water bridges: A:S.326, A:F.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Angell, R. et al., Biphenyl amide p38 kinase inhibitors 3: Improvement of cellular and in vivo activity. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-07-22

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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