SMTL ID : 3dbp.1

Crystal Structure of Human Orotidine 5'-Monophosphate Decarboxylase Complexed with 6-NH2-UMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.173, G.228 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.173, A:T.173 Water bridges: A:G.228, A:G.228 SO4.3: 2 residues within 4Å: Chain B: T.173, G.228 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.173, B:T.173 Water bridges: B:G.228, B:G.228

2 x NUP: 6-AMINOURIDINE 5'-MONOPHOSPHATE(Non-covalent)

NUP.2: 17 residues within 4Å: Chain A: S.56, D.58, K.80, H.82, D.111, K.113, M.170, S.171, P.216, Q.229, Y.231, V.248, G.249, R.250 Chain B: D.116, I.117, T.120 18 PLIP interactions: 16 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:P.216 Hydrogen bonds: A:S.56, A:K.80, A:D.111, A:K.113, A:S.171, A:S.171, A:S.171, A:Q.229, A:G.249, A:R.250, B:D.116, B:T.120 Water bridges: A:G.217, A:G.217, A:Q.219, A:G.251 Salt bridges: A:R.250 NUP.4: 18 residues within 4Å: Chain A: D.116, I.117, T.120 Chain B: S.56, D.58, K.80, H.82, D.111, K.113, M.170, S.171, I.200, P.216, Q.229, Y.231, V.248, G.249, R.250 18 PLIP interactions: 2 interactions with chain A, 16 interactions with chain B Hydrogen bonds: A:D.116, A:T.120, B:S.56, B:K.80, B:D.111, B:K.113, B:S.171, B:S.171, B:S.171, B:Q.229, B:G.249, B:R.250 Hydrophobic interactions: B:I.200, B:P.216 Water bridges: B:G.217, B:G.217, B:G.251 Salt bridges: B:R.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Crystal Structure of Human Orotidine 5'-Monophosphate Decarboxylase Complexed with 6-NH2-UMP. To be Published

Release Date

2009-06-23

Peptides

Orotidine 5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine 5'-phosphate decarboxylase

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