SMTL ID : 3dhg.3 (2 other biounits)

Crystal Structure of Toluene 4-Monoxygenase Hydroxylase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: E.104, E.134, H.137 Ligands: FE.2 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.104, A:E.134, A:H.137, H2O.1, H2O.1, H2O.1 FE.2: 5 residues within 4Å: Chain A: E.134, E.197, E.231, H.234 Ligands: FE.1 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.134, A:E.197, A:E.231, A:H.234, H2O.1, H2O.1 FE.9: 6 residues within 4Å: Chain D: E.134, E.197, E.231, H.234 Ligands: FE.10, AZI.11 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.134, D:E.197, D:E.231, D:H.234, H2O.42 FE.10: 5 residues within 4Å: Chain D: E.104, E.134, H.137 Ligands: FE.9, AZI.11 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.104, D:E.134, D:H.137, H2O.33, H2O.42

9 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.3: 1 residues within 4Å: Chain B: E.184 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.184, H2O.16, H2O.17, H2O.21, H2O.54 CA.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.5: 1 residues within 4Å: Chain B: Q.108 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:Q.108, H2O.26, H2O.26 CA.6: 6 residues within 4Å: Chain B: K.31, L.32, H.33, D.70, A.145, S.146 No protein-ligand interaction detected (PLIP) CA.7: 2 residues within 4Å: Chain B: D.179 Chain E: D.179 5 PLIP interactions: 1 interactions with chain E, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: E:D.179, B:D.179, H2O.16, H2O.20, H2O.48 CA.8: 1 residues within 4Å: Chain C: A.68 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:A.68, H2O.26, H2O.27, H2O.27, H2O.27 CA.12: 3 residues within 4Å: Chain D: S.60 Chain E: D.88, S.92 5 PLIP interactions: 2 interactions with chain E, 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: E:D.88, E:D.88, D:S.60, H2O.36, H2O.55 CA.13: 5 residues within 4Å: Chain E: K.31, L.32, H.33, A.145, S.146 No protein-ligand interaction detected (PLIP) CA.14: 1 residues within 4Å: Chain F: A.68 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.56, H2O.56, H2O.56, H2O.56, H2O.56

1 x AZI: AZIDE ION(Non-covalent)

AZI.11: 6 residues within 4Å: Chain D: E.104, E.134, E.197, E.231 Ligands: FE.9, FE.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bailey, L.J. et al., Structural consequences of effector protein complex formation in a diiron hydroxylase. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-12-30

Peptides

toluene 4-monooxygenase hydroxylase alpha subunit: AD
toluene 4-monooxygenase hydroxylase beta subunit: BE
toluene 4-monooxygenase hydroxylase gamma subunit: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
C

F
F

toluene 4-monooxygenase hydroxylase alpha subunit

toluene 4-monooxygenase hydroxylase beta subunit

toluene 4-monooxygenase hydroxylase gamma subunit

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