SMTL ID : 3dlj.3 (2 other biounits)

Crystal structure of human carnosine dipeptidase 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: D.143, E.177, E.178, H.456 Ligands: ZN.2, UNX.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.143, A:E.178, A:E.178, A:H.456 ZN.2: 8 residues within 4Å: Chain A: H.110, D.143, N.144, E.177, E.178, D.206 Ligands: ZN.1, UNX.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.110, A:D.143, A:D.206, A:D.206 ZN.13: 5 residues within 4Å: Chain B: D.143, E.178, H.456 Ligands: ZN.14, UNX.15 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.143, B:E.178, B:E.178, B:H.456 ZN.14: 7 residues within 4Å: Chain B: H.110, D.143, E.177, E.178, D.206 Ligands: ZN.13, UNX.15 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.110, B:D.143, B:D.206, B:D.206

15 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 5 residues within 4Å: Chain A: D.143, E.177, D.206 Ligands: ZN.1, ZN.2 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: R.354 Chain B: H.239, T.341 No protein-ligand interaction detected (PLIP) UNX.5: 5 residues within 4Å: Chain A: H.239, T.341 Chain B: R.354, H.456 Ligands: UNX.15 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: D.335, E.336 Chain B: D.120 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain A: V.45, R.47 No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Chain A: R.47 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain A: D.235 Chain B: R.303 No protein-ligand interaction detected (PLIP) UNX.10: 2 residues within 4Å: Chain A: A.252, A.256 No protein-ligand interaction detected (PLIP) UNX.11: 4 residues within 4Å: Chain A: L.247, H.248, E.249, A.252 No protein-ligand interaction detected (PLIP) UNX.15: 7 residues within 4Å: Chain A: H.239 Chain B: D.143, E.177, D.206 Ligands: UNX.5, ZN.13, ZN.14 No protein-ligand interaction detected (PLIP) UNX.16: 2 residues within 4Å: Chain B: D.335, E.336 No protein-ligand interaction detected (PLIP) UNX.17: 3 residues within 4Å: Chain B: P.357, H.358, P.395 No protein-ligand interaction detected (PLIP) UNX.18: 5 residues within 4Å: Chain B: M.228, E.230, V.386, V.387, S.388 No protein-ligand interaction detected (PLIP) UNX.19: 4 residues within 4Å: Chain B: E.26, F.27, T.30, N.153 No protein-ligand interaction detected (PLIP) UNX.20: 2 residues within 4Å: Chain A: E.305 Chain B: C.233 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.12: 4 residues within 4Å: Chain A: R.303 Chain B: R.234, D.235, Q.236 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.303 Hydrogen bonds: B:D.235, B:Q.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dobrovetsky, E. et al., Crystal structure of human carnosine dipeptidase 1. To be Published

Release Date

2008-08-19

Peptides

Beta-Ala-His dipeptidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-Ala-His dipeptidase

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