SMTL ID : 3dm6.3 (2 other biounits)

Beta-secretase 1 complexed with statine-based inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 757: 5-[[(2S)-2-[[(3R,4S)-5-(3,5-difluorophenoxy)-3-hydroxy-4-[[3-(methyl-methylsulfonyl-amino)-5-[[(1R)-1-phenylethyl]carbamoyl]phenyl]carbonylamino]pentanoyl]amino]-3-methyl-butanoyl]amino]benzene-1,3-dicarboxylic acid(Non-covalent)

757.1: 31 residues within 4Å: Chain A: G.32, Q.33, G.34, L.51, D.53, G.55, S.56, V.90, P.91, Y.92, T.93, Q.94, G.95, F.129, I.131, W.136, I.139, I.147, R.149, Y.219, D.249, S.250, G.251, T.252, T.253, N.254, R.256, S.346, T.350, A.356 Ligands: IPA.2 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:L.51, A:V.90, A:Y.92, A:Q.94, A:F.129, A:F.129, A:I.131, A:I.147, A:Y.219, A:T.252, A:T.253, A:A.356 Hydrogen bonds: A:D.53, A:G.55, A:P.91, A:T.93, A:T.93, A:Q.94, A:Q.94, A:R.149, A:Y.219, A:G.251, A:G.251, A:T.252, A:T.253, A:T.253, A:N.254, A:S.346

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.2: 6 residues within 4Å: Chain A: T.93, Y.219, K.245, I.247, T.350 Ligands: 757.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.219, A:I.247 Hydrogen bonds: A:T.93 Water bridges: A:T.93, A:R.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Back, M. et al., Design, synthesis and SAR of potent statine-based BACE-1 inhibitors: exploration of P1 phenoxy and benzyloxy residues. Bioorg.Med.Chem. (2008)

Release Date

2008-12-16

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Beta-secretase 1

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