SMTL ID : 3dn6.1

1,3,5-trifluoro-2,4,6-trichlorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.125, W.126, D.127, E.128 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.125, A:W.126, A:D.127, A:E.128, A:E.128 PO4.2: 2 residues within 4Å: Chain A: N.144, R.148 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.144 Water bridges: A:R.148, A:R.148, A:R.148, A:R.148 Salt bridges: A:R.148

1 x F3B: 1,3,5-trichloro-2,4,6-trifluorobenzene(Non-covalent)

F3B.3: 12 residues within 4Å: Chain A: I.78, L.84, V.87, Y.88, L.91, A.99, M.102, V.103, V.111, L.118, L.121, F.153 No protein-ligand interaction detected (PLIP)

2 x HED: 2-HYDROXYETHYL DISULFIDE(Non-covalent)

HED.4: 4 residues within 4Å: Chain A: Y.88, A.93, R.96, I.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.88, A:A.93 HED.5: 6 residues within 4Å: Chain A: G.30, H.31, L.32, D.70, V.103, F.104 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding. J.Mol.Biol. (2009)

Release Date

2008-11-11

Peptides

Lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme

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