SMTL ID : 3hh4.1

New azaborine compounds bind to the T4 lysozyme L99A cavity - Benzene as control

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

2 x HED: 2-HYDROXYETHYL DISULFIDE(Non-covalent)

HED.1: 3 residues within 4Å: Chain A: F.4, D.72, V.75 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.76 HED.2: 8 residues within 4Å: Chain A: G.30, H.31, L.32, D.70, A.73, A.74, V.103, F.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.30, A:L.32

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 2 residues within 4Å: Chain A: R.14, K.19 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.19, A:K.19, A:K.19 Salt bridges: A:R.14

1 x BNZ: BENZENE(Non-covalent)

BNZ.4: 7 residues within 4Å: Chain A: L.84, V.87, Y.88, A.99, V.111, L.118, F.153 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.84, A:V.87, A:A.99, A:V.111, A:L.118, A:F.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Boron mimetics: 1,2-dihydro-1,2-azaborines bind inside a nonpolar cavity of T4 lysozyme. Angew.Chem.Int.Ed.Engl. (2009)

Release Date

2009-10-13

Peptides

Lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme

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