SMTL ID : 3doc.1 (4 other biounits)

Crystal Structure of TrkA glyceraldehyde-3-phosphate dehydrogenase from Brucella melitensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 16 residues within 4Å: Chain A: G.9, F.10, G.11, R.12, I.13, D.36, C.98, T.99, G.100, S.122, A.123, C.153, N.316, E.317, F.320 Chain B: M.192 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.320 Hydrogen bonds: A:F.10, A:G.11, A:R.12, A:I.13, A:E.317 Water bridges: A:G.100, A:S.122 NAD.2: 22 residues within 4Å: Chain A: T.191, M.192 Chain B: G.9, F.10, G.11, R.12, I.13, N.35, D.36, L.37, R.80, C.98, T.99, G.100, F.102, S.122, A.123, C.153, T.183, N.316, E.317, F.320 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.320 Hydrogen bonds: B:F.10, B:R.12, B:I.13, B:R.80, B:T.183, A:T.191 Water bridges: B:N.8, B:G.11, B:G.14, B:G.100, B:S.122, B:T.183, B:E.317, B:E.317, A:T.191 NAD.3: 21 residues within 4Å: Chain C: G.9, F.10, G.11, R.12, I.13, N.35, D.36, L.37, V.79, R.80, C.98, T.99, G.100, F.102, S.122, A.123, C.153, T.183, N.316, F.320 Chain D: M.192 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:I.13, C:F.320 Hydrogen bonds: C:R.12, C:I.13, C:N.35, C:R.80 Water bridges: C:F.10, C:G.11, C:G.14, C:R.15, C:T.183, C:D.185, D:T.191 NAD.4: 23 residues within 4Å: Chain C: T.191, M.192 Chain D: G.9, F.10, G.11, R.12, I.13, N.35, D.36, L.37, V.79, R.80, C.98, T.99, G.100, I.101, F.102, S.122, A.123, C.153, T.183, N.316, F.320 20 PLIP interactions: 17 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: D:I.13, D:F.320 Hydrogen bonds: D:F.10, D:R.12, D:I.13, D:N.35, D:R.80, D:T.183, C:T.191 Water bridges: D:N.8, D:G.11, D:G.14, D:G.100, D:G.100, D:T.183, D:T.183, D:G.184, D:E.317, C:T.191, C:M.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID), Crystal Structure of TrkA glyceraldehyde-3-phosphate dehydrogenase from Brucella melitensis. To be Published

Release Date

2008-07-29

Peptides

glyceraldehyde 3-phosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

glyceraldehyde 3-phosphate dehydrogenase

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