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SMTL ID : 3doc.4
(4 other biounits)
Crystal Structure of TrkA glyceraldehyde-3-phosphate dehydrogenase from Brucella melitensis
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.40 Å
Oligo State
homo-dimer
Ligands
2 x
NAD
:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
(Non-covalent)
NAD.1:
21 residues within 4Å:
Chain A:
G.9
,
F.10
,
G.11
,
R.12
,
I.13
,
N.35
,
D.36
,
L.37
,
V.79
,
R.80
,
C.98
,
T.99
,
G.100
,
F.102
,
S.122
,
A.123
,
C.153
,
T.183
,
N.316
,
F.320
Chain B:
M.192
13
PLIP interactions
:
12 interactions with chain A
,
1 interactions with chain B
Hydrophobic interactions:
A:I.13
,
A:F.320
Hydrogen bonds:
A:R.12
,
A:I.13
,
A:N.35
,
A:R.80
Water bridges:
A:F.10
,
A:G.11
,
A:G.14
,
A:R.15
,
A:T.183
,
A:D.185
,
B:T.191
NAD.2:
23 residues within 4Å:
Chain A:
T.191
,
M.192
Chain B:
G.9
,
F.10
,
G.11
,
R.12
,
I.13
,
N.35
,
D.36
,
L.37
,
V.79
,
R.80
,
C.98
,
T.99
,
G.100
,
I.101
,
F.102
,
S.122
,
A.123
,
C.153
,
T.183
,
N.316
,
F.320
20
PLIP interactions
:
17 interactions with chain B
,
3 interactions with chain A
Hydrophobic interactions:
B:I.13
,
B:F.320
Hydrogen bonds:
B:F.10
,
B:R.12
,
B:I.13
,
B:N.35
,
B:R.80
,
B:T.183
,
A:T.191
Water bridges:
B:N.8
,
B:G.11
,
B:G.14
,
B:G.100
,
B:G.100
,
B:T.183
,
B:T.183
,
B:G.184
,
B:E.317
,
A:T.191
,
A:M.192
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Seattle Structural Genomics Center for Infectious Disease (SSGCID), Crystal Structure of TrkA glyceraldehyde-3-phosphate dehydrogenase from Brucella melitensis. To be Published
Release Date
2008-07-29
Peptides
glyceraldehyde 3-phosphate dehydrogenase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
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glyceraldehyde 3-phosphate dehydrogenase
Related Entries With Identical Sequence
3doc.1
|
3doc.2
|
3doc.3
|
3doc.5
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
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