SMTL ID : 3dqv.3 (2 other biounits)

Structural Insights into NEDD8 Activation of Cullin-RING Ligases: Conformational Control of Conjugation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-2-2-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain C: C.73, H.75, F.77, C.92, D.95 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.75, C:C.92, C:D.95 ZN.2: 4 residues within 4Å: Chain C: C.40, C.43, H.78, C.81 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.40, C:C.43, C:C.81 ZN.3: 4 residues within 4Å: Chain C: C.51, C.54, C.66, H.80 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.54, C:C.66, C:H.80 ZN.4: 4 residues within 4Å: Chain F: C.51, C.54, C.66, H.80 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.51, F:C.54, F:C.66, F:H.80 ZN.5: 4 residues within 4Å: Chain F: C.40, C.43, H.78, C.81 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.40, F:C.43, F:H.78, F:C.81 ZN.6: 4 residues within 4Å: Chain F: C.73, H.75, C.92, D.95 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.73, F:H.75, F:C.92, F:D.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duda, D.M. et al., Structural insights into NEDD8 activation of cullin-RING ligases: conformational control of conjugation. Cell(Cambridge,Mass.) (2008)

Release Date

2008-09-30

Peptides

NEDD8: AD
Cullin-5: BE
Rbx1: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

D
A

B
D

E
C

C
Y

F
R

NEDD8

Cullin-5

Rbx1

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