SMTL ID : 4p5o.1 (1 other biounit)

Structure of an RBX1-UBC12~NEDD8-CUL1-DCN1 complex: a RING-E3-E2~ubiquitin-like protein-substrate intermediate trapped in action

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.40, C.43, H.78, C.81 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.40, B:C.43, B:H.78, B:C.81 ZN.2: 4 residues within 4Å: Chain B: C.73, H.75, C.92, D.95 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.73, B:H.75, B:C.92, B:D.95, B:D.95 ZN.3: 4 residues within 4Å: Chain B: C.51, C.54, C.66, H.80 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.51, B:C.54, B:C.66, B:H.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scott, D.C. et al., Structure of a RING E3 Trapped in Action Reveals Ligation Mechanism for the Ubiquitin-like Protein NEDD8. Cell (2014)

Release Date

2014-07-02

Peptides

Cullin-1: A
E3 ubiquitin-protein ligase RBX1: B
DCN1-like protein 1: C
NEDD8-conjugating enzyme Ubc12: D
NEDD8: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

D
I

E
K

Cullin-1

E3 ubiquitin-protein ligase RBX1

DCN1-like protein 1

NEDD8-conjugating enzyme Ubc12

NEDD8

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