- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 4.10 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.1: 6 residues within 4Å:- Chain A: D.98, A.99, N.101, G.144, T.145
- Ligands: GTP-GTP-GDP-GDP.3
No protein-ligand interaction detected (PLIP)MG.2: 6 residues within 4Å:- Chain C: D.98, N.101, G.144, T.145
- Chain D: K.252
- Ligands: GTP-GTP-GDP-GDP.3
No protein-ligand interaction detected (PLIP)- 1 x GTP- GTP- GDP- GDP: GUANOSINE-5'-TRIPHOSPHATE
GTP-GTP-GDP-GDP.3: 85 residues within 4Å:- Chain A: G.10, Q.11, A.12, Q.15, I.16, D.69, E.71, D.98, A.99, S.140, G.142, G.143, G.144, T.145, G.146, I.171, P.173, V.177, S.178, T.179, E.183, N.206, Y.224, N.228, M.231
- Chain B: G.10, Q.11, C.12, S.138, G.140, G.142, T.143, P.171, V.175, S.176, E.181, N.204, Y.222, L.225, N.226
- Chain C: G.10, Q.11, A.12, Q.15, I.16, D.69, E.71, D.98, A.99, S.140, G.142, G.143, G.144, T.145, G.146, I.171, P.173, V.177, S.178, E.183, N.206, Y.224, N.228, M.231
- Chain D: G.10, Q.11, C.12, I.16, D.67, N.99, S.138, G.140, G.142, T.143, P.171, V.175, S.176, E.181, N.204, L.207, Y.222, N.226, K.252
- Ligands: MG.1, MG.2
17 PLIP interactions:2 interactions with chain D, 15 interactions with chain C- Hydrogen bonds: D:Q.11, D:Q.11, D:C.12, D:S.138, D:G.142, D:T.143, D:T.143, D:S.176, D:S.176, D:E.181, D:E.181, D:N.204, D:N.204, D:N.204, C:Q.11, C:A.12, C:D.98, C:S.140, C:G.144, C:T.145, C:G.146, C:S.178, C:E.183, C:N.206, C:N.206, C:N.206, C:Y.224, C:N.228
- pi-Stacking: C:Y.224
- Salt bridges: D:K.252, D:K.252
- 2 x CN2: 2-MERCAPTO-N-[1,2,3,10-TETRAMETHOXY-9-OXO-5,6,7,9-TETRAHYDRO-BENZO[A]HEPTALEN-7-YL]ACETAMIDE(Non-covalent)
CN2.4: 17 residues within 4Å:- Chain A: S.178, T.179, A.180, V.181
- Chain B: V.236, C.239, L.240, L.246, A.248, K.252, L.253, N.256, M.257, V.313, A.314, V.316, K.350
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:A.248, B:L.253
CN2.5: 18 residues within 4Å:- Chain C: S.178, T.179, A.180, V.181
- Chain D: V.236, C.239, L.240, A.248, K.252, L.253, N.256, M.257, V.313, A.314, V.316, N.348, K.350, I.368
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:A.248, D:K.252, D:L.253, D:N.256
- Hydrogen bonds: C:V.181
- 2 x HOS: PHOMOPSIN A(Non-covalent)
HOS.6: 15 residues within 4Å:- Chain B: P.173, V.175, S.176, D.177, T.219, P.220, T.221, Y.222, G.223
- Chain C: P.325, V.328, N.329, F.351, V.353, I.355
17 PLIP interactions:5 interactions with chain C, 12 interactions with chain B- Hydrophobic interactions: C:P.325, C:V.328, C:V.353, C:I.355, B:V.175, B:V.175, B:Y.222, B:Y.222, B:Y.222
- Hydrogen bonds: C:N.329, B:P.173, B:V.175, B:S.176, B:D.177, B:T.221, B:Y.222, B:G.223
HOS.7: 9 residues within 4Å:- Chain D: V.175, S.176, D.177, Y.208, T.219, P.220, T.221, Y.222, G.223
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:V.175, D:T.219, D:T.221, D:Y.222, D:Y.222, D:Y.222
- Hydrogen bonds: D:V.175, D:S.176, D:T.221, D:Y.222, D:G.223
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cormier, A. et al., Structural insight into the inhibition of tubulin by vinca domain peptide ligands. Embo Rep. (2008)
- Release Date
- 2008-10-21
- Peptides
- Tubulin alpha-1C chain: AC
Tubulin beta-2B chain: BD
Stathmin-4: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 4.10 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 1 x GTP- GTP- GDP- GDP: GUANOSINE-5'-TRIPHOSPHATE
- 2 x CN2: 2-MERCAPTO-N-[1,2,3,10-TETRAMETHOXY-9-OXO-5,6,7,9-TETRAHYDRO-BENZO[A]HEPTALEN-7-YL]ACETAMIDE(Non-covalent)
- 2 x HOS: PHOMOPSIN A(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cormier, A. et al., Structural insight into the inhibition of tubulin by vinca domain peptide ligands. Embo Rep. (2008)
- Release Date
- 2008-10-21
- Peptides
- Tubulin alpha-1C chain: AC
Tubulin beta-2B chain: BD
Stathmin-4: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
DE
E