SMTL ID : 3dwk.2 (3 other biounits)

Identification of Dynamic Structural Motifs Involved in Peptidoglycan Glycosyltransfer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

13 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: S.331, S.387, S.502, K.516, T.517, G.518, T.519 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.331, A:S.387, A:S.502, A:T.517, A:T.517, A:T.519, A:T.519, A:T.519 Salt bridges: A:K.516 SO4.2: 4 residues within 4Å: Chain A: D.4, H.27, H.29, K.127 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.27, A:H.29 SO4.3: 4 residues within 4Å: Chain A: Y.370, N.535, G.570, H.571 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.535, A:H.571 SO4.4: 3 residues within 4Å: Chain A: T.620, N.621, R.622 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.619, A:N.621, A:R.622 SO4.5: 4 residues within 4Å: Chain A: Q.292, V.318, N.319, R.320 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.292, A:N.319, A:R.320, A:R.320 SO4.6: 3 residues within 4Å: Chain A: W.348, S.398, N.402 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.398, A:S.398, A:N.402 SO4.7: 2 residues within 4Å: Chain A: H.54, G.55 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.55 Salt bridges: A:H.54 SO4.8: 5 residues within 4Å: Chain A: Y.522, G.523, E.525, T.526, K.538 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.523, A:T.526, A:T.526 Salt bridges: A:K.538 SO4.9: 3 residues within 4Å: Chain A: K.147, N.153, N.212 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.153, A:N.212 Salt bridges: A:K.147 SO4.10: 2 residues within 4Å: Chain A: R.26, R.216 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.26, A:R.216 SO4.11: 5 residues within 4Å: Chain A: D.174, H.175, P.176, K.177, A.178 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.177, A:A.178 Salt bridges: A:H.175, A:K.177 SO4.12: 3 residues within 4Å: Chain A: Y.106, Y.109, R.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.106, A:Y.106 Salt bridges: A:R.110 SO4.13: 5 residues within 4Å: Chain A: S.603, N.610, S.612, G.613, Q.615 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.603, A:N.610, A:G.613, A:Q.615

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovering, A.L. et al., Identification of dynamic structural motifs involved in peptidoglycan glycosyltransfer. J.Mol.Biol. (2008)

Release Date

2008-09-30

Peptides

Penicillin-binding protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Penicillin-binding protein 2

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