SMTL ID : 3dwk.4 (3 other biounits)

Identification of Dynamic Structural Motifs Involved in Peptidoglycan Glycosyltransfer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.370, N.535, G.570, H.571 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.535, A:H.571 SO4.2: 4 residues within 4Å: Chain A: G.523, E.525, T.526, K.538 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.523, A:E.525 Salt bridges: A:K.538 SO4.3: 6 residues within 4Å: Chain A: S.603, N.610, V.611, S.612, G.613, Q.615 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.603, A:N.610, A:G.613, A:Q.615 SO4.4: 5 residues within 4Å: Chain A: R.50, H.54, D.58, Y.59, K.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.58, A:Y.59, A:K.60 Salt bridges: A:R.50 SO4.5: 3 residues within 4Å: Chain A: Q.292, N.319, R.320 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.292, A:N.319, A:R.320 SO4.6: 7 residues within 4Å: Chain A: S.331, S.387, S.502, K.516, T.517, G.518, T.519 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.331, A:S.387, A:T.517, A:T.517, A:T.519, A:T.519 Salt bridges: A:K.516 SO4.7: 3 residues within 4Å: Chain A: T.275, N.278, K.587 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.275, A:N.278 SO4.8: 5 residues within 4Å: Chain A: D.174, H.175, P.176, K.177, A.178 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.177, A:A.178 Salt bridges: A:H.175, A:K.177 SO4.9: 3 residues within 4Å: Chain A: W.348, S.398, N.402 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.398, A:S.398, A:N.402

1 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.10: 5 residues within 4Å: Chain A: Y.59, A.102, A.105, Y.106, Y.109 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.102, A:A.105, A:Y.106, A:Y.109, A:Y.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovering, A.L. et al., Identification of dynamic structural motifs involved in peptidoglycan glycosyltransfer. J.Mol.Biol. (2008)

Release Date

2008-09-30

Peptides

Penicillin-binding protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Penicillin-binding protein 2

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