SMTL ID : 3dye.1

Crystal structure of AED7-norepineprhine complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

4 x BR: BROMIDE ION(Non-covalent)

BR.1: 6 residues within 4Å: Chain A: L.10, R.147, K.149, K.150, I.273, Y.274 Ligand excluded by PLIP BR.2: 3 residues within 4Å: Chain A: Y.80, P.81, S.82 Ligand excluded by PLIP BR.3: 4 residues within 4Å: Chain A: P.29, M.30, K.33, P.41 Ligand excluded by PLIP BR.4: 3 residues within 4Å: Chain A: L.31, K.35, A.275 Ligand excluded by PLIP

1 x LNR: L-NOREPINEPHRINE(Non-covalent)

LNR.5: 11 residues within 4Å: Chain A: F.154, E.158, I.175, R.176, Y.178, H.189, Y.248, F.264, D.265, E.268, V.293 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.248, A:F.264 Hydrogen bonds: A:E.158, A:E.158, A:I.175, A:H.189, A:E.268 pi-Stacking: A:F.154

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: F.13, W.34, W.37, N.39, F.50, H.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.39 Water bridges: A:W.34, A:W.37 GOL.7: 5 residues within 4Å: Chain A: K.125, G.130, N.131, K.132, E.133 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.132, A:E.133 Water bridges: A:D.122, A:K.125, A:N.131 GOL.8: 1 residues within 4Å: Chain A: D.19 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.19, A:D.19, A:R.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Calvo, E. et al., Multifunctionality and mechanism of ligand binding in a mosquito antiinflammatory protein. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-02-03

Peptides

D7 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D7 protein

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