SMTL ID : 3dz5.1

Human AdoMetDC with covalently bound 5'-[(2-aminooxyethyl)methylamino]-5'-deoxy-8-methyladenosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PUT: 1,4-DIAMINOBUTANE(Non-covalent)

PUT.1: 7 residues within 4Å: Chain A: L.13, E.15 Chain B: F.44, D.107, T.109, F.218, Y.251 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.44, B:F.218, B:F.218 Hydrogen bonds: B:D.107, B:T.109, B:Y.251 Water bridges: B:S.46, A:E.15

1 x M8M: 5'-{[2-(aminooxy)ethyl](methyl)amino}-5'-deoxy-8-methyladenosine(Covalent)

M8M.2: 18 residues within 4Å: Chain A: F.7, L.65, S.66, E.67 Chain B: X.1, S.2, C.15, F.156, N.157, C.159, G.160, Y.161, S.162, H.176, I.177, T.178, P.179, E.180 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.156 Hydrogen bonds: B:S.162, B:H.176, B:I.177, A:E.67, A:E.67 pi-Stacking: B:F.156, B:F.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCloskey, D.E. et al., New Insights into the Design of Inhibitors of Human S-Adenosylmethionine Decarboxylase: Studies of Adenine C8 Substitution in Structural Analogues of S-Adenosylmethionine. J.Med.Chem. (2009)

Release Date

2009-03-10

Peptides

S-adenosylmethionine decarboxylase beta chain: A
S-adenosylmethionine decarboxylase alpha chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

S-adenosylmethionine decarboxylase beta chain

S-adenosylmethionine decarboxylase alpha chain

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