- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- homo-24-mer
- Ligands
- 32 x SO4: SULFATE ION(Non-functional Binders)
- 48 x ZN: ZINC ION(Non-covalent)
ZN.2: 4 residues within 4Å:- Chain A: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.18, A:E.18, A:E.51, A:H.54, A:E.127
ZN.3: 4 residues within 4Å:- Chain A: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.51, A:E.94, A:E.94, A:E.127, A:H.130
ZN.7: 4 residues within 4Å:- Chain B: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.18, B:E.18, B:E.51, B:H.54, B:E.127
ZN.8: 4 residues within 4Å:- Chain B: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.51, B:E.94, B:E.94, B:E.127, B:H.130
ZN.10: 4 residues within 4Å:- Chain C: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:E.18, C:E.18, C:E.51, C:H.54, C:E.127
ZN.11: 4 residues within 4Å:- Chain C: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:E.51, C:E.94, C:E.94, C:E.127, C:H.130
ZN.14: 4 residues within 4Å:- Chain D: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:E.18, D:E.18, D:E.51, D:H.54, D:E.127
ZN.15: 4 residues within 4Å:- Chain D: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:E.51, D:E.94, D:E.94, D:E.127, D:H.130
ZN.18: 4 residues within 4Å:- Chain E: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:E.18, E:E.18, E:E.51, E:H.54, E:E.127
ZN.19: 4 residues within 4Å:- Chain E: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:E.51, E:E.94, E:E.94, E:E.127, E:H.130
ZN.22: 4 residues within 4Å:- Chain F: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:E.18, F:E.18, F:E.51, F:H.54, F:E.127
ZN.23: 4 residues within 4Å:- Chain F: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:E.51, F:E.94, F:E.94, F:E.127, F:H.130
ZN.26: 4 residues within 4Å:- Chain G: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:E.18, G:E.18, G:E.51, G:H.54, G:E.127
ZN.27: 4 residues within 4Å:- Chain G: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:E.51, G:E.94, G:E.94, G:E.127, G:H.130
ZN.30: 4 residues within 4Å:- Chain H: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain H- Metal complexes: H:E.18, H:E.18, H:E.51, H:H.54, H:E.127
ZN.31: 4 residues within 4Å:- Chain H: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain H- Metal complexes: H:E.51, H:E.94, H:E.94, H:E.127, H:H.130
ZN.34: 4 residues within 4Å:- Chain I: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain I- Metal complexes: I:E.18, I:E.18, I:E.51, I:H.54, I:E.127
ZN.35: 4 residues within 4Å:- Chain I: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain I- Metal complexes: I:E.51, I:E.94, I:E.94, I:E.127, I:H.130
ZN.38: 4 residues within 4Å:- Chain J: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain J- Metal complexes: J:E.18, J:E.18, J:E.51, J:H.54, J:E.127
ZN.39: 4 residues within 4Å:- Chain J: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain J- Metal complexes: J:E.51, J:E.94, J:E.94, J:E.127, J:H.130
ZN.41: 4 residues within 4Å:- Chain K: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain K- Metal complexes: K:E.18, K:E.18, K:E.51, K:H.54, K:E.127
ZN.42: 4 residues within 4Å:- Chain K: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain K- Metal complexes: K:E.51, K:E.94, K:E.94, K:E.127, K:H.130
ZN.45: 4 residues within 4Å:- Chain L: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain L- Metal complexes: L:E.18, L:E.18, L:E.51, L:H.54, L:E.127
ZN.46: 4 residues within 4Å:- Chain L: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain L- Metal complexes: L:E.51, L:E.94, L:E.94, L:E.127, L:H.130
ZN.48: 4 residues within 4Å:- Chain M: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain M- Metal complexes: M:E.18, M:E.18, M:E.51, M:H.54, M:E.127
ZN.49: 4 residues within 4Å:- Chain M: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain M- Metal complexes: M:E.51, M:E.94, M:E.94, M:E.127, M:H.130
ZN.53: 4 residues within 4Å:- Chain N: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain N- Metal complexes: N:E.18, N:E.18, N:E.51, N:H.54, N:E.127
ZN.54: 4 residues within 4Å:- Chain N: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain N- Metal complexes: N:E.51, N:E.94, N:E.94, N:E.127, N:H.130
ZN.56: 4 residues within 4Å:- Chain O: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain O- Metal complexes: O:E.18, O:E.18, O:E.51, O:H.54, O:E.127
ZN.57: 4 residues within 4Å:- Chain O: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain O- Metal complexes: O:E.51, O:E.94, O:E.94, O:E.127, O:H.130
ZN.60: 4 residues within 4Å:- Chain P: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain P- Metal complexes: P:E.18, P:E.18, P:E.51, P:H.54, P:E.127
ZN.61: 4 residues within 4Å:- Chain P: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain P- Metal complexes: P:E.51, P:E.94, P:E.94, P:E.127, P:H.130
ZN.64: 4 residues within 4Å:- Chain Q: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain Q- Metal complexes: Q:E.18, Q:E.18, Q:E.51, Q:H.54, Q:E.127
ZN.65: 4 residues within 4Å:- Chain Q: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain Q- Metal complexes: Q:E.51, Q:E.94, Q:E.94, Q:E.127, Q:H.130
ZN.68: 4 residues within 4Å:- Chain R: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain R- Metal complexes: R:E.18, R:E.18, R:E.51, R:H.54, R:E.127
ZN.69: 4 residues within 4Å:- Chain R: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain R- Metal complexes: R:E.51, R:E.94, R:E.94, R:E.127, R:H.130
ZN.72: 4 residues within 4Å:- Chain S: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain S- Metal complexes: S:E.18, S:E.18, S:E.51, S:H.54, S:E.127
ZN.73: 4 residues within 4Å:- Chain S: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain S- Metal complexes: S:E.51, S:E.94, S:E.94, S:E.127, S:H.130
ZN.76: 4 residues within 4Å:- Chain T: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain T- Metal complexes: T:E.18, T:E.18, T:E.51, T:H.54, T:E.127
ZN.77: 4 residues within 4Å:- Chain T: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain T- Metal complexes: T:E.51, T:E.94, T:E.94, T:E.127, T:H.130
ZN.80: 4 residues within 4Å:- Chain U: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain U- Metal complexes: U:E.18, U:E.18, U:E.51, U:H.54, U:E.127
ZN.81: 4 residues within 4Å:- Chain U: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain U- Metal complexes: U:E.51, U:E.94, U:E.94, U:E.127, U:H.130
ZN.84: 4 residues within 4Å:- Chain V: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain V- Metal complexes: V:E.18, V:E.18, V:E.51, V:H.54, V:E.127
ZN.85: 4 residues within 4Å:- Chain V: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain V- Metal complexes: V:E.51, V:E.94, V:E.94, V:E.127, V:H.130
ZN.87: 4 residues within 4Å:- Chain W: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain W- Metal complexes: W:E.18, W:E.18, W:E.51, W:H.54, W:E.127
ZN.88: 4 residues within 4Å:- Chain W: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain W- Metal complexes: W:E.51, W:E.94, W:E.94, W:E.127, W:H.130
ZN.91: 4 residues within 4Å:- Chain X: E.18, E.51, H.54, E.127
5 PLIP interactions:5 interactions with chain X- Metal complexes: X:E.18, X:E.18, X:E.51, X:H.54, X:E.127
ZN.92: 4 residues within 4Å:- Chain X: E.51, E.94, E.127, H.130
5 PLIP interactions:5 interactions with chain X- Metal complexes: X:E.51, X:E.94, X:E.94, X:E.127, X:H.130
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.5: 15 residues within 4Å:- Chain A: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56
- Chain B: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
15 PLIP interactions:6 interactions with chain A, 9 interactions with chain B,- Hydrophobic interactions: A:I.22, A:F.26, A:Y.45, A:I.49, A:M.52, A:A.55, B:L.19, B:I.22, B:F.26, B:F.26, B:F.26, B:Y.45, B:I.49, B:I.49, B:M.52
HEM.16: 16 residues within 4Å:- Chain C: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56, I.59
- Chain D: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
14 PLIP interactions:6 interactions with chain C, 8 interactions with chain D,- Hydrophobic interactions: C:I.22, C:F.26, C:I.49, C:M.52, C:A.55, C:I.59, D:L.19, D:I.22, D:F.26, D:F.26, D:Y.45, D:I.49, D:I.49, D:M.52
HEM.20: 15 residues within 4Å:- Chain E: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56
- Chain F: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
14 PLIP interactions:6 interactions with chain E, 8 interactions with chain F,- Hydrophobic interactions: E:I.22, E:F.26, E:Y.45, E:I.49, E:M.52, E:A.55, F:L.19, F:I.22, F:F.26, F:F.26, F:Y.45, F:I.49, F:I.49, F:M.52
HEM.32: 16 residues within 4Å:- Chain G: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56
- Chain H: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, D.56
14 PLIP interactions:6 interactions with chain G, 8 interactions with chain H,- Hydrophobic interactions: G:I.22, G:F.26, G:I.49, G:I.49, G:M.52, G:A.55, H:L.19, H:I.22, H:F.26, H:F.26, H:Y.45, H:I.49, H:I.49, H:M.52
HEM.36: 15 residues within 4Å:- Chain I: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56
- Chain J: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
16 PLIP interactions:8 interactions with chain J, 8 interactions with chain I,- Hydrophobic interactions: J:L.19, J:I.22, J:F.26, J:F.26, J:Y.45, J:I.49, J:I.49, J:M.52, I:I.22, I:F.26, I:F.26, I:Y.45, I:I.49, I:I.49, I:M.52, I:A.55
HEM.43: 15 residues within 4Å:- Chain K: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56
- Chain L: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
15 PLIP interactions:8 interactions with chain L, 7 interactions with chain K,- Hydrophobic interactions: L:L.19, L:I.22, L:F.26, L:F.26, L:Y.45, L:I.49, L:I.49, L:M.52, K:I.22, K:F.26, K:F.26, K:I.49, K:I.49, K:M.52, K:A.55
HEM.51: 15 residues within 4Å:- Chain M: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56
- Chain N: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
15 PLIP interactions:6 interactions with chain M, 9 interactions with chain N,- Hydrophobic interactions: M:I.22, M:F.26, M:Y.45, M:I.49, M:M.52, M:A.55, N:L.19, N:I.22, N:F.26, N:F.26, N:F.26, N:Y.45, N:I.49, N:I.49, N:M.52
HEM.62: 16 residues within 4Å:- Chain O: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56, I.59
- Chain P: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
14 PLIP interactions:8 interactions with chain P, 6 interactions with chain O,- Hydrophobic interactions: P:L.19, P:I.22, P:F.26, P:F.26, P:Y.45, P:I.49, P:I.49, P:M.52, O:I.22, O:F.26, O:I.49, O:M.52, O:A.55, O:I.59
HEM.66: 15 residues within 4Å:- Chain Q: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56
- Chain R: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
14 PLIP interactions:6 interactions with chain Q, 8 interactions with chain R,- Hydrophobic interactions: Q:I.22, Q:F.26, Q:Y.45, Q:I.49, Q:M.52, Q:A.55, R:L.19, R:I.22, R:F.26, R:F.26, R:Y.45, R:I.49, R:I.49, R:M.52
HEM.78: 16 residues within 4Å:- Chain S: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56
- Chain T: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, D.56
14 PLIP interactions:8 interactions with chain T, 6 interactions with chain S,- Hydrophobic interactions: T:L.19, T:I.22, T:F.26, T:F.26, T:Y.45, T:I.49, T:I.49, T:M.52, S:I.22, S:F.26, S:I.49, S:I.49, S:M.52, S:A.55
HEM.82: 15 residues within 4Å:- Chain U: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56
- Chain V: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
16 PLIP interactions:8 interactions with chain U, 8 interactions with chain V,- Hydrophobic interactions: U:I.22, U:F.26, U:F.26, U:Y.45, U:I.49, U:I.49, U:M.52, U:A.55, V:L.19, V:I.22, V:F.26, V:F.26, V:Y.45, V:I.49, V:I.49, V:M.52
HEM.89: 15 residues within 4Å:- Chain W: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56
- Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52
15 PLIP interactions:7 interactions with chain W, 8 interactions with chain X,- Hydrophobic interactions: W:I.22, W:F.26, W:F.26, W:I.49, W:I.49, W:M.52, W:A.55, X:L.19, X:I.22, X:F.26, X:F.26, X:Y.45, X:I.49, X:I.49, X:M.52
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Crow, A. et al., Structural basis for iron mineralization by bacterioferritin. J.Am.Chem.Soc. (2009)
- Release Date
- 2009-05-05
- Peptides
- BACTERIOFERRITIN: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
AN
BO
CP
DQ
ER
FS
GT
HU
IV
JW
KX
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- homo-24-mer
- Ligands
- 32 x SO4: SULFATE ION(Non-functional Binders)
- 48 x ZN: ZINC ION(Non-covalent)
- 12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Crow, A. et al., Structural basis for iron mineralization by bacterioferritin. J.Am.Chem.Soc. (2009)
- Release Date
- 2009-05-05
- Peptides
- BACTERIOFERRITIN: ABCDEFGHIJKLMNOPQRSTUVWX
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
AN
BO
CP
DQ
ER
FS
GT
HU
IV
JW
KX
L