- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain B: R.15, K.17, I.24
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.15, B:K.17
SO4.3: 4 residues within 4Å:- Chain B: Y.13, R.15, I.24, H.26
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.13
- Salt bridges: B:R.15, B:H.26
SO4.11: 3 residues within 4Å:- Chain A: R.15, K.17, I.24
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.15, A:K.17
SO4.12: 4 residues within 4Å:- Chain A: Y.13, R.15, I.24, H.26
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.15, A:H.26
- 2 x AT6: N-[2-(6-AMINO-4-METHYLPYRIDIN-2-YL)ETHYL]-4-CYANOBENZAMIDE(Non-covalent)
AT6.4: 13 residues within 4Å:- Chain A: Q.192, R.195, A.211, P.279, V.281, F.298, N.299, G.300, W.301, Y.302, E.306, R.317
- Ligands: HEM.5
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:P.279, A:V.281, A:F.298
- Hydrogen bonds: A:R.195, A:E.306
- Water bridges: A:R.195, A:Q.316
AT6.13: 13 residues within 4Å:- Chain B: Q.192, R.195, A.211, P.279, V.281, F.298, N.299, G.300, W.301, Y.302, E.306, R.317
- Ligands: HEM.14
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:P.279, B:V.281, B:F.298
- Hydrogen bonds: B:R.195, B:E.306
- Water bridges: B:R.195, B:Y.276, B:Y.276, B:E.306, B:Q.316
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
HEM.5: 18 residues within 4Å:- Chain A: W.123, A.126, R.128, C.129, L.138, S.171, M.284, F.298, N.299, G.300, W.301, E.306, W.392, Y.418, Y.420
- Ligands: AT6.4, H4B.6, EDO.8
17 PLIP interactions:17 interactions with chain A,- Hydrophobic interactions: A:W.123, A:W.123, A:W.123, A:A.126, A:F.298, A:F.298, A:F.298, A:F.298, A:W.301, A:W.301, A:E.306, A:W.392, A:Y.418
- Hydrogen bonds: A:Y.420
- Water bridges: A:Y.420
- pi-Stacking: A:W.123
- Metal complexes: A:C.129
HEM.14: 18 residues within 4Å:- Chain B: W.123, A.126, R.128, C.129, L.138, S.171, M.284, F.298, N.299, G.300, W.301, E.306, W.392, Y.418, Y.420
- Ligands: AT6.13, H4B.15, EDO.17
17 PLIP interactions:17 interactions with chain B,- Hydrophobic interactions: B:W.123, B:W.123, B:W.123, B:A.126, B:F.298, B:F.298, B:F.298, B:F.298, B:W.301, B:W.301, B:E.306, B:W.392, B:Y.418
- Water bridges: B:E.306, B:Y.420
- pi-Stacking: B:W.123
- Metal complexes: B:C.129
- 2 x H4B: 5,6,7,8-TETRAHYDROBIOPTERIN(Non-covalent)
H4B.6: 11 residues within 4Å:- Chain A: S.47, M.49, R.310, I.391, W.392
- Chain B: W.390, F.405, H.406, Q.407, E.408
- Ligands: HEM.5
11 PLIP interactions:9 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.310, A:R.310, A:I.391, A:W.392
- Water bridges: A:W.392, B:H.406
- pi-Stacking: A:W.392, A:W.392
- pi-Cation interactions: A:W.392, A:W.392
- Hydrophobic interactions: B:E.408
H4B.15: 11 residues within 4Å:- Chain A: W.390, F.405, H.406, Q.407, E.408
- Chain B: S.47, M.49, R.310, I.391, W.392
- Ligands: HEM.14
11 PLIP interactions:2 interactions with chain A, 9 interactions with chain B- Hydrophobic interactions: A:E.408
- Water bridges: A:H.406, B:W.392
- Hydrogen bonds: B:R.310, B:R.310, B:I.391, B:W.392
- pi-Stacking: B:W.392, B:W.392
- pi-Cation interactions: B:W.392, B:W.392
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.7: 3 residues within 4Å:- Chain A: N.166, L.256, Q.358
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.166
- Water bridges: A:N.359, A:N.359
EDO.8: 6 residues within 4Å:- Chain A: G.131, I.133, W.301, M.363, S.371
- Ligands: HEM.5
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.301, A:S.371, A:S.371
EDO.9: 5 residues within 4Å:- Chain A: V.349, L.352, H.353, Q.356
- Chain B: A.336
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.356, B:A.336
EDO.16: 3 residues within 4Å:- Chain B: N.166, L.256, Q.358
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.166
- Water bridges: B:N.359, B:N.359
EDO.17: 6 residues within 4Å:- Chain B: G.131, I.133, W.301, M.363, S.371
- Ligands: HEM.14
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:W.301, B:S.371, B:S.371
EDO.18: 5 residues within 4Å:- Chain A: A.336
- Chain B: V.349, L.352, H.353, Q.356
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Q.356, A:A.336
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Garcin, E.D. et al., Anchored plasticity opens doors for selective inhibitor design in nitric oxide synthase. Nat.Chem.Biol. (2008)
- Release Date
- 2008-10-07
- Peptides
- Nitric oxide synthase, inducible: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x AT6: N-[2-(6-AMINO-4-METHYLPYRIDIN-2-YL)ETHYL]-4-CYANOBENZAMIDE(Non-covalent)
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x H4B: 5,6,7,8-TETRAHYDROBIOPTERIN(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Garcin, E.D. et al., Anchored plasticity opens doors for selective inhibitor design in nitric oxide synthase. Nat.Chem.Biol. (2008)
- Release Date
- 2008-10-07
- Peptides
- Nitric oxide synthase, inducible: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
B