SMTL ID : 3e6f.1

MHC CLASS I H-2Dd Heavy chain complexed with Beta-2 Microglobulin and a variant peptide, PA9, from the Human immunodeficiency virus (BaL) envelope glycoprotein 120

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ILE- GLY- PRO- GLY- ARG- ALA- PHE- TYR- ALA: Envelope glycoprotein 9-residue peptide(Non-covalent)

ILE-GLY-PRO-GLY-ARG-ALA-PHE-TYR-ALA.1: 24 residues within 4Å: Chain A: Y.7, E.63, R.66, N.70, S.73, F.74, V.76, D.77, T.80, Y.84, W.97, A.99, W.114, F.116, T.143, K.146, W.147, A.150, A.152, R.155, Y.159, E.163, W.167, Y.171 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:F.74, A:V.76, A:W.97, A:W.97, A:A.99, A:W.114, A:A.150, A:A.152, A:Y.159, A:Y.159, A:E.163, A:W.167 Hydrogen bonds: A:Y.7, A:E.63, A:R.66, A:N.70, A:N.70, A:D.77, A:Y.84, A:K.146, A:Y.171 Water bridges: A:Y.7, A:S.73, A:S.73, A:D.77, A:T.80 Salt bridges: A:D.77, A:K.146 pi-Cation interactions: A:F.74, A:W.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Honda, M. et al., Different vaccine vectors delivering the same antigen elicit CD8+ T cell responses with distinct clonotype and epitope specificity. J.Immunol. (2009)

Release Date

2009-08-18

Peptides

H-2 class I histocompatibility antigen, D-D alpha chain: A
BETA-2 MICROGLOBULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

H-2 class I histocompatibility antigen, D-D alpha chain

BETA-2 MICROGLOBULIN

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