SMTL ID : 3e79.1

Structure determination of the cancer-associated Mycoplasma hyorhinis protein Mh-p37

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x I3C: 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid(Non-covalent)

I3C.1: 10 residues within 4Å: Chain A: G.165, D.167, V.172, K.176, N.179, K.232, N.236, E.333, A.334, L.335 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:K.232 Hydrogen bonds: A:N.236, A:E.333, A:L.335 Salt bridges: A:K.176, A:K.176, A:K.232 pi-Cation interactions: A:K.176 Halogen bonds: A:G.165, A:A.334 I3C.2: 5 residues within 4Å: Chain A: K.238, D.239, W.240, N.241, K.273 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.273 Hydrogen bonds: A:W.240, A:N.241, A:N.241 Salt bridges: A:K.273 Halogen bonds: A:K.273

1 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)

TPP.3: 17 residues within 4Å: Chain A: A.126, K.129, N.200, V.201, Y.215, S.255, S.256, S.257, K.258, E.308, W.314, Y.343, D.344, P.377, L.378, L.379, G.380 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.201, A:Y.215, A:Y.215, A:Y.343 Hydrogen bonds: A:Y.215, A:S.256, A:S.257, A:S.257 Water bridges: A:K.129, A:K.129, A:K.129 Salt bridges: A:K.129, A:K.129, A:K.258, A:K.258 pi-Stacking: A:W.314, A:W.314, A:Y.343

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: D.43, S.45, P.118, D.121 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.45, A:P.118, A:D.121, H2O.1, H2O.4

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain A: N.87 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sippel, K.H. et al., Structure determination of the cancer-associated Mycoplasma hyorhinis protein Mh-p37. Acta Crystallogr.,Sect.D (2008)

Release Date

2008-10-21

Peptides

High affinity transport system protein p37: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

High affinity transport system protein p37

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