SMTL ID : 3e7c.3 (2 other biounits)

Glucocorticoid Receptor LBD bound to GSK866

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 866: 5-amino-N-[(2S)-2-({[(2,6-dichlorophenyl)carbonyl](ethyl)amino}methyl)-3,3,3-trifluoro-2-hydroxypropyl]-1-(4-fluorophenyl)-1H-pyrazole-4-carboxamide(Non-covalent)

866.1: 20 residues within 4Å: Chain A: L.43, N.44, L.46, G.47, Q.50, W.80, M.81, M.84, A.87, L.88, R.91, F.103, G.118, M.119, Q.122, M.126, Y.215, C.216, T.219, F.229 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Q.50, A:A.87, A:Y.215 Hydrogen bonds: A:M.40, A:L.43, A:Q.50, A:M.84, A:Q.122 pi-Stacking: A:F.103 Halogen bonds: A:Y.215

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: G.178, V.182, N.191, W.192 No protein-ligand interaction detected (PLIP) GOL.3: 8 residues within 4Å: Chain A: P.21, Q.50, A.54, W.57, L.83, M.84, A.87, K.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.147, A:K.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Madauss, K.P. et al., The first X-ray crystal structure of the glucocorticoid receptor bound to a non-steroidal agonist. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-11-25

Peptides

Glucocorticoid receptor: A
Nuclear receptor coactivator 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Glucocorticoid receptor

Nuclear receptor coactivator 2

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