SMTL ID : 3eba.1

CAbHul6 FGLW mutant (humanized) in complex with human lysozyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.35, A.58, D.59, S.60 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.60, A:S.60, A:S.60 Water bridges: A:R.35, A:E.43, A:E.43 Salt bridges: A:R.35 SO4.2: 2 residues within 4Å: Chain A: Q.1, Q.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.1, A:Q.1 SO4.3: 4 residues within 4Å: Chain A: Y.56, W.101, L.103 Chain B: H.78 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:H.78 Hydrogen bonds: A:W.101 SO4.4: 2 residues within 4Å: Chain A: T.55, Y.57 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.55 Water bridges: A:T.55 SO4.5: 3 residues within 4Å: Chain A: V.12, Q.13, G.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.13 Water bridges: A:S.17 SO4.6: 4 residues within 4Å: Chain B: E.7, R.10, T.11, R.14 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.7, B:E.7 Salt bridges: B:R.10, B:R.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vincke, C. et al., General Strategy to Humanize a Camelid Single-domain Antibody and Identification of a Universal Humanized Nanobody Scaffold. J.Biol.Chem. (2009)

Release Date

2008-12-02

Peptides

CAbHul6: A
Lysozyme C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CAbHul6

Lysozyme C

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