SMTL ID : 3ed3.1 (1 other biounit)

Crystal Structure of the Yeast Dithiol/Disulfide Oxidoreductase Mpd1p

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: Y.36, D.65, G.66, V.68, Q.69, K.286 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.69 Hydrogen bonds: A:G.66 Water bridges: A:H.18, A:Y.36, A:K.286, A:K.286 Salt bridges: A:K.286 ACT.2: 4 residues within 4Å: Chain A: D.28, H.32, K.86, A.118 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.118 Water bridges: A:Y.87 Salt bridges: A:H.32, A:K.86 ACT.3: 3 residues within 4Å: Chain A: Q.172, S.176, P.177 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.172 ACT.4: 1 residues within 4Å: Chain A: R.63 1 PLIP interactions: 1 interactions with chain A Water bridges: A:V.178 ACT.5: 3 residues within 4Å: Chain A: N.33, T.34, N.35 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.35 ACT.6: 3 residues within 4Å: Chain A: P.24, D.28, L.83 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.24 Water bridges: A:K.86 Salt bridges: A:K.86

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 4 residues within 4Å: Chain A: R.99, P.101, A.120, R.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.142 Water bridges: A:K.102, A:K.102 EDO.8: 7 residues within 4Å: Chain A: A.30, T.34, Y.36, Q.69, E.272, R.278, I.282 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.30, A:T.34, A:Q.69, A:R.278 Water bridges: A:G.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vitu, E. et al., Yeast Mpd1p reveals the structural diversity of the protein disulfide isomerase family. J.Mol.Biol. (2008)

Release Date

2008-11-04

Peptides

Protein disulfide-isomerase MPD1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein disulfide-isomerase MPD1

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