SMTL ID : 3ed3.2 (1 other biounit)

Crystal Structure of the Yeast Dithiol/Disulfide Oxidoreductase Mpd1p

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: Y.36, G.66, I.282, K.286 Ligands: ACT.2, EDO.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.282 Hydrogen bonds: A:D.65, A:G.66 Water bridges: A:Y.36, A:G.66, A:V.70, A:K.286 Salt bridges: A:K.286 ACT.2: 4 residues within 4Å: Chain A: D.65, G.66, K.286 Ligands: ACT.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.66 Water bridges: A:G.66, A:K.286 Salt bridges: A:K.286 ACT.3: 2 residues within 4Å: Chain A: R.63, P.177 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.177 Salt bridges: A:R.63

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 8 residues within 4Å: Chain A: A.30, T.34, Y.36, Q.69, E.272, R.278, I.282 Ligands: ACT.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.30, A:T.34, A:Q.69, A:E.272, A:R.278 EDO.5: 4 residues within 4Å: Chain A: K.102, R.142, S.143, Y.144 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.142, A:R.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vitu, E. et al., Yeast Mpd1p reveals the structural diversity of the protein disulfide isomerase family. J.Mol.Biol. (2008)

Release Date

2008-11-04

Peptides

Protein disulfide-isomerase MPD1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein disulfide-isomerase MPD1

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