SMTL ID : 3eek.2 (1 other biounit)

Candida glabrata Dihydrofolate Reductase complexed with 2,4-diamino-5-[3-methyl-3-(3-methoxy-5-(4-methylphenyl)phenyl)prop-1-ynyl]-6-methylpyrimidine(UCP111D4M) and NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 27 residues within 4Å: Chain A: V.10, A.11, I.19, G.20, F.21, G.23, N.24, L.25, G.55, R.56, K.57, T.58, V.77, S.78, R.79, N.96, S.97, L.98, I.121, G.122, G.123, G.124, E.125, I.126, Y.127, Q.129 Ligands: 53S.2 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:L.25, A:T.58 Hydrogen bonds: A:A.11, A:I.19, A:F.21, A:G.23, A:G.23, A:G.55, A:R.56, A:R.56, A:K.57, A:T.58, A:R.79, A:R.79, A:R.79, A:L.98, A:G.122, A:G.123, A:G.124, A:E.125, A:I.126, A:Q.129, A:Q.129 Water bridges: A:T.155, A:T.155 Salt bridges: A:R.56, A:K.57 pi-Cation interactions: A:R.79, A:R.79

1 x 53S: 5-[(3R)-3-(5-methoxy-4'-methylbiphenyl-3-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine(Non-covalent)

53S.2: 18 residues within 4Å: Chain A: I.9, V.10, A.11, G.23, L.25, R.28, E.32, M.33, F.36, T.58, S.61, I.62, P.63, F.66, I.121, Y.127, T.140 Ligands: NDP.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.25, A:F.36, A:T.58, A:I.62, A:I.62, A:P.63, A:F.66, A:I.121 Hydrogen bonds: A:I.9, A:V.10, A:Y.127, A:T.140 Water bridges: A:L.25, A:E.32, A:T.140 Salt bridges: A:E.32 pi-Stacking: A:F.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Probing the active site of Candida glabrata dihydrofolate reductase with high resolution crystal structures and the synthesis of new inhibitors. Chem.Biol.Drug Des. (2009)

Release Date

2009-08-18

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Dihydrofolate reductase

Related Entries With Identical Sequence